Pseudomonas tohonis: TUM18999_07350
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Entry
TUM18999_07350 CDS
T07887
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptw
Pseudomonas tohonis
Pathway
ptw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TUM18999_07350 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptw03021
]
TUM18999_07350 (rpoD)
Transcription machinery [BR:
ptw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TUM18999_07350 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
BCG22544
UniProt:
A0A6J4E0R3
LinkDB
All DBs
Position
complement(804218..806068)
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AA seq
616 aa
AA seq
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MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILAEYHRVTTEGGRLSDVLAGYIDPDDGSLPAEEV
EPVDLKDDSAAKEKDEDEEEEGDGDDTEEEGDGGPDPEEALRRFTAVSDQLEKARKALKK
HGRSSKQAIDELQGLAELFMPIKLVPKQFDALVDRVRDALDRVRAQERAIMQLCVRDARM
PRADFLRLFPGNEVDLTWVEGLAKGKAKYAEALGKLVEDVKRNQQKLIDLEKEVDLKVAE
IKDVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagagttgatcgcccgtggtcgtgag
cagggttacctgacttacgcggaggtcaatgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gccccggatgcggatgccctgttgttggccgaagccgacaccgacgaagctgccgcggaa
gaagccgctgccgctctcgccgcggtcgagaccgacatcggccggaccaccgacccggtg
cgcatgtacatgcgcgaaatggggaccgtggagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgcgatcgcccacttcccc
ggtaccgtcgacagcatccttgccgaataccaccgtgtcaccaccgaaggcggtcgtctc
tccgacgtcctcgccggttacatcgaccctgacgacggcagcctgccggccgaagaagtc
gagcctgtcgacctgaaggacgacagcgccgcgaaggaaaaggacgaggacgaagaagag
gaaggcgacggcgacgacaccgaggaagaaggtgacggcggcccggacccggaagaagcg
ctgcgtcgcttcaccgccgtatccgaccagctcgagaaagcccgcaaggccctgaagaag
cacggccgcagcagcaagcaggcgatcgacgagctgcaaggcctggccgaactcttcatg
cccatcaagctggtgccgaagcagttcgacgccctggtcgaccgcgtccgtgacgccctc
gaccgcgtccgcgcccaagaacgcgccatcatgcagctctgcgtgcgtgatgcccgcatg
ccgcgtgccgacttcctgcgcctgttcccgggcaacgaagtcgacctgacctgggtcgaa
ggcctcgccaagggcaaggccaagtacgccgaagccctcggcaagctggtggaagacgtc
aagcgcaaccagcagaagctgatcgacctcgagaaggaagtcgacctcaaggtcgccgag
atcaaggacgtcaaccgccgcatgtccatcggcgaagcgaaagcccgccgggcgaagaaa
gagatggtcgaggccaacctgcgtctcgtgatctccatcgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgccgcggctacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgctcgatcgccgaccaggcccgcaccatccgtatcccggtgcacatgatc
gagaccatcaacaagctcaaccgcatctcccgtcagatgctccaggaaatgggccgcgag
cccaccccggaagagcttggcgagcgcatggaaatgcccgaggacaagatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaggactcc
cacctgggcgacttcatcgaggacagcaccatgcagtccccgatcgacgtggccacggta
gaaagcctcaaggaagcgacccgcgaagtactggccggcctcaccgcccgtgaagccaag
gtcctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtcggc
aagcagttcgatgtgacccgcgagcggatccgccagatcgaagccaaggcgctgcgcaag
ctgcgccacccgtcgcgaagcgagcatctgcgctccttcctcgacgagtga
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