Pseudomonas tohonis: TUM18999_11520
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Entry
TUM18999_11520 CDS
T07887
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptw
Pseudomonas tohonis
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptw03016
]
TUM18999_11520 (rtcB_1)
Enzymes [BR:
ptw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TUM18999_11520 (rtcB_1)
Transfer RNA biogenesis [BR:
ptw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TUM18999_11520 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
TUM18999_11520 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCG22961
UniProt:
A0A6J4E318
LinkDB
All DBs
Position
complement(1248893..1250119)
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AA seq
408 aa
AA seq
DB search
MSNETFQLLEVADGKPIKLWTQGVPVEDDARKQLINTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEKAVPHGRSVSRG
GRDKGAWEDVPELADHAWSALAGRFKVITDKYPRLEKTNNRKHLGTLGTGNHFIEVCLDE
AQRVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFAKQNRAMMMHAVIAAARTVIKKPFEANLEAVNCHHNYVQKEQHFGQEVLVTRKG
AVSAQKGQLGIIPGSMGARSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKKLFTVDDQIRA
TAHVECRKDEDVIDEIPMAYKDIDAVMHAQRELVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaaaccttccaactgctggaagtcgccgacggcaaaccgatcaagctctgg
acccagggcgtaccggtggaggacgacgcgcgcaagcaactgatcaacaccgcgaagatg
cccttcatcttcaagcacctggccgtgatgccggacgtgcacctgggcaaggggtcgacc
atcggcagcgtgatccccaccgttggcgccatcatcccggccgccgtgggcgtggacatc
ggttgcggaatgatcgccgcgcgcacctcgctgaccgcctccgacctgccggacaacctg
gccggcctgcgtagcgccatcgagaaggccgtgccccatgggcgcagcgtgtcccgcggt
ggtcgagacaagggcgcctgggaagacgtgccggagctggcggaccacgcctggtcggcc
ctggccgggcgcttcaaggtgatcaccgacaagtacccgcgcctggagaagaccaacaac
cgcaagcacctgggaaccctgggaaccggcaaccacttcatcgaggtctgcctggacgag
gcccagcgcgtctggttcatgctccacagcggatcgcgcggtgtgggtaacgccatcggc
agcctgttcatcgaactggcccaggccgatatgcgccagcacatcgccaacctgccggac
cgcgacctggcctacttcgaagaaggcagccagcacttcgacgactacgtggaggccgtg
ggctgggcccaggacttcgccaagcagaaccgcgcgatgatgatgcacgccgtgatcgcg
gcggcgcgtacggtgatcaagaaacccttcgaggccaacctggaagcggtgaactgccac
cacaactacgtgcagaaggagcagcacttcggtcaggaagtcctggtgacccgcaagggc
gcggtatcggcgcagaagggccagctgggcatcatcccggggtccatgggcgcgcgcagc
ttcatcgtgcgcggcctgggtaacgaggaggcgttctgctcctgcagccacggcgccggc
cgcaccatgagccgcaccaaggcgaagaagctgttcaccgtggacgaccagatccgcgcc
accgcccatgtggaatgccgcaaggacgaggacgtgatcgacgagatccccatggcctac
aaggacatcgacgccgtgatgcatgcccagcgcgagctggtggaagtggtgcataccctg
cgccaggtggtctgcgttaaaggatga
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