Pseudomonas tohonis: TUM18999_15300
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Entry
TUM18999_15300 CDS
T07887
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptw
Pseudomonas tohonis
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptw03019
]
TUM18999_15300
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TUM18999_15300
Messenger RNA biogenesis [BR:
ptw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TUM18999_15300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
nSTAND3
AAA_19
NACHT
AAA_25
T2SSE
nSTAND_NTPase5
ABC_tran
ResIII
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BCG23339
UniProt:
A0A6J4E1U4
LinkDB
All DBs
Position
1658646..1662545
Genome browser
AA seq
1299 aa
AA seq
DB search
MTDIASLHKNLDHALIADRHRLRRQLHELHKKPDEAKLAQWLERFQASCAKVEARRASVP
RMRYDDALPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGTHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSNERSLIKLMTDGILLAETQHDRLLE
RYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFGDAPIVEV
SGRTYPVETWYRPLAAEVDENGEALFDDLSVDQGILRALDEIADHERAEGKRPGDVLVFL
PGEREIRDAAEVLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEEDF
LGRPQFTDPEILRTNLAAVILQMLHLRLGEIGDFPFIEPPDGKAVSDGFTLLQELSAVNR
EGQLTPLGRQLARLPVDPRLGRMVLEGASQGSLDEVLLITSALSVQDPRERPMERQQAAD
QAHAQWKDVDSDFAALVNLWRGFEEQRQALGSNALRTWCRKNFLNYMRLREWRDAHRQLT
LICRELKLSINKEPADYPRVHKALLSGLLSQIGQKSEDGDYLGARQRRFWIHPSTVIAKK
RPQWIMAAELVETTKLFARMVAKIDPDWLEPLAGHLVKKNHLEPHWEKRRGQVVAYEQVT
LYGLIVVGRRPVHYGPIDPPVARELFIREGLVRGEIHSRAKCLAANRQLLERLDELEAKA
RRRDILADEETLFGYYAARLPEDIYQTASFEKWYERERAKNPELLIMREEDVLAREASEV
TAAQYPDTLRIGELQLPLDYHFEPGHPRDGVTLRVPAPLLPQLPAERLDWLVPGLLEAKC
VALVRNLPKAIRKNFVPVPDFVKAALAKLAFAQGSLPEALGRELQRMTGARVPEEAWAEA
AGLLEHHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAIPQKQGEQRPVEAKGF
AQVAEKTQQKVAGLSMTVYPALVEEGGSVKESRFPTQAEADWQHRRALQRLLLQQLAEPA
KYLRGKLPGLTELGLLYRDMGRVDALVEDILLASLDSCILDGEASLPRDGAALASLAEKK
RGAWAEHAERLARLTLDILKLWHGLQKRFKGRIDLAQAVALNDIKAQLGNLVYPGFVRET
PAEWLKEVPRYLKAIEQRFDKIGAQLQRDRVWSGELAGYWEQYQARLAKHAQEGKRDPEL
VLYRWMLEEYRVSLFAQQLGTKMAVSDKRLNKQWTQVEG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcgcctccctgcacaagaacctcgaccacgccctgatcgccgaccgccat
cgcctgcgccgccagctccacgagctgcacaagaagccggacgaggcgaagctcgcccag
tggctggaacgcttccaggcttcctgcgccaaggtcgaggcccgtcgcgccagcgtgccg
cgcatgcgctacgacgacgccctgcccatcgccgccaagcgcgacgagatcaaggccgcc
ctggagaagcaccaggtgctggtgatcgccggcgagaccggctcgggcaagaccacccag
ctgccgaagatctgcctggagatcggccgcggcacccacggcctgatcggccacacccag
ccgcgccggctggccgcgcgcagcgtggcgacccgcgtggccgaggagatcggcacgccc
ctgggggaactggtgggctaccaggtgcgcttcgaggaccagtccaacgagcgcagcctg
atcaagctgatgaccgacggcatcctcctggccgaaacccagcacgaccgcctgctcgag
cgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgacttcctc
ctgggctacctgaagaccctgctgccacgacgcccggacctgaagctgatcatcacctcg
gcgaccatcgacctggagcgcttttccaagcacttcggcgacgcgcccatcgtcgaggtc
tccggccgcacctacccggtggagacctggtaccggcccctggccgccgaggtggatgag
aacggcgaggcgctgttcgacgacctgtcggtggaccaaggcatcctccgcgccctggac
gagatcgccgaccacgagcgcgccgaaggcaagcgcccgggcgatgtgctggtgttcctc
cccggcgagcgcgagatccgcgacgccgccgaggtgctgcgcaaggccaacctgcgccac
accgaggtgctgccgctctatgcacggctgaccccggccgagcagcagaagatcttcgcg
cccatgccgggccgcaagatcgtgctcgccaccaacgtcgccgaaacctcgctgacggtg
cccggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgctacagctaccgc
gccaaggtccagcgcctgcccatcgaggccgtgtcccaggccagcgccaaccagcgcaag
ggccgctgcgggcgggtcgagccgggcatctgcgtgcgcctgtacagcgaggaggacttc
ctcggccgcccgcagttcaccgacccggagatcctgcgcaccaacctggcggcggtgatc
ctgcagatgctccacctgcgcctgggcgagatcggcgacttccccttcatcgaaccgccg
gacggcaaggcggtgagcgacggcttcaccctgctgcaggagctctcggcagtgaaccgc
gagggccagctcacgcccctgggccgccagctggcacgcctgccggtggacccgcgcctg
ggccgcatggtgctggaaggcgccagccagggcagcctcgacgaggtgctgctgatcacc
agtgcgctctcggtgcaggacccgcgcgaacggccgatggaacgccagcaggccgccgac
caggcccacgcgcaatggaaggatgtggattccgacttcgccgcgctggtcaacctctgg
cgcggcttcgaggagcagcgccaggcgctgggctccaacgccctgcgcacctggtgccgg
aagaacttcctcaactacatgcgcctgcgcgagtggcgtgatgcccaccgccagctgacg
ctgatctgccgcgagctcaagctctccatcaacaaggagccggcggactacccgcgcgtg
cacaaggcgctgctctccggcctgctcagccagatcggccagaagagcgaggacggcgac
tacctcggcgcccgccagcggcgtttctggatccatccctcgaccgtgatcgccaagaag
cgcccgcagtggatcatggccgccgagctggtggagaccaccaagctgttcgcgcgcatg
gtcgccaagatcgaccccgactggctggaacccctggccggccacctggtgaagaagaac
cacctggagccgcactgggagaagcgccgtggccaggtcgtggcctacgagcaggtcacc
ctctacgggctgatcgtggtcggccgccgcccggtgcactacgggcccatcgacccgccg
gtggcgcgcgagctgttcatccgcgagggcctggtgcgcggtgagatccacagccgcgcc
aagtgcctggccgccaaccgccagttgctggaacggctcgacgagctggaagccaaggcc
cgccgccgcgacatcctcgccgacgaggaaaccctcttcggctactacgccgcgcgcctg
cccgaggacatctaccagaccgccagcttcgagaagtggtacgagcgcgagcgggcgaag
aatcccgagctgctgatcatgcgcgaggaggacgtgctggcccgcgaagccagcgaagtc
accgccgcgcagtacccggacaccctgcgcatcggcgagcttcaactgccgctggactac
cacttcgaacccggccacccgcgtgacggcgtgaccctgcgggtgcccgcgcccctgttg
ccgcagctgcccgccgagcgcctcgactggctggtgcccggcctgctggaagccaagtgc
gtggccctggtgcgcaacctgcccaaggccatccgcaagaacttcgtgccggtgccggat
ttcgtgaaggccgcgctggccaagctggccttcgcccagggctcgctgcccgaggcgctg
ggccgcgaactgcagcgcatgaccggcgcccgcgtgcccgaggaggcctgggcggaagcc
gccggcctgctggagcaccacctgaagatgaacatcgaggtggtggacgcgcgcggcaag
ttcctcggcgaaggccgtgacctggccgagctgaccgcgcgcttcgccgaggccagccag
gccgccctggccatcccgcagaagcagggcgagcagcgcccggtggaagccaagggcttc
gcccaggtggcggagaagacccagcagaaggtcgccggcctgtccatgaccgtctacccg
gcgctggtggaggagggcggcagcgtcaaggaaagccgcttccccacccaggccgaggcc
gactggcagcaccgccgcgccctgcagcggctgctgttgcaacaactggccgagccggcc
aagtacctgcgcggcaagctgccgggcctgaccgagctgggcctgctgtaccgcgacatg
ggccgggtcgacgcgctggtggaggacatcctcctggccagcctcgacagctgcatactc
gacggcgaagccagcctgccccgcgatggcgcggccctggcctcgctggcggagaagaag
cgcggtgcctgggccgagcacgccgaacgcctggcccgcctgaccctggacatcctcaag
ctctggcatggcctgcagaagcgcttcaagggccgcatcgacctggcccaggcggtggcg
ctcaacgacatcaaggcgcagctgggcaacctcgtgtaccccggtttcgtccgcgagacc
ccggccgagtggctgaaggaagtgccgcgctacctcaaggccatcgagcagcgcttcgac
aagatcggcgcccagctgcagcgtgaccgcgtctggtccggcgagctggccggctattgg
gagcagtaccaggcgcgcctggccaagcatgcccaggaaggcaagcgcgaccccgaactg
gtgctgtaccgctggatgctggaggagtaccgcgtgtccctcttcgcccagcagctgggg
acgaagatggcggtctccgacaagcgtctcaacaagcagtggacccaggtggagggttga
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