Pseudomonas tohonis: TUM18999_16160
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Entry
TUM18999_16160 CDS
T07887
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM18999_16160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptw03019
]
TUM18999_16160
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_16160
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM18999_16160
Messenger RNA biogenesis [BR:
ptw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM18999_16160
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TUM18999_16160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_20
HTH_29
HTH_23
DUF433
GerE
HTH_7
Motif
Other DBs
NCBI-ProteinID:
BCG23425
UniProt:
A0A6J4E251
LinkDB
All DBs
Position
1752426..1754621
Genome browser
AA seq
731 aa
AA seq
DB search
MGEGFLRRSLTYNARLHSETRMLDHAQRILKDVFGYDAFRGHQAAIIDRVAKGGDVLVLM
PTGGGKSLCFQVPALMRDGLAVVVSPLIALMEDQVATLDELGVAAVALNSTLSNDEQRDI
ADRIRRGEIKMLYLAPERLVQPRMLGFLQNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQ
LAELFPEVPRIALTATADMRTREEIVQRLHLQNAERFLSSFDRPNIFYRIVAKDSPRKQL
LSFLTERRGDAGIVYCLSRKKVDEVAAFLSEQGYPALPYHAGLPSDLRAYHQKRFLNEEG
LIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLL
LKQMLNNSEGDERHKRIEQHKLDAMLALCEEIRCRRQALLAYFDEELPQPCGHCDICVDG
VQTWDATEPARQALSAIYRSGQRYGVGHLVDLLLGRDNEKVRAAGHQHLSVFGMGKALSE
GEWRTLFRQLVARGLADVDLDGFGGLRLTDACRPLLRGEVSLQLRRDLSTKAPKPAASAA
SQLVRGEEREQWEALRALRRKLAEEHSVPPYVIFPDATLLEMLRSKPGTLAEMARVSGVG
ARKLERYGEAFLDVLNGGADAAPAPRAVADLRHELVSLARAGMTPAQIARQLDCTEKNVY
SLLAEAISEQQLSLEQALDLPEEMLGAVQDAFLDGEGELPSVAEVAEMLGGKVPEGVLHC
VRAALQAEFES
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagggcttcctcaggcgttcgctgacgtataatgcgcggcttcattcggagacc
cgcatgctcgaccacgcccagcgcatcctcaaagacgtattcggctacgacgccttccgc
ggccaccaggcggcgatcatcgaccgcgtggccaagggcggcgatgtgctggtgctgatg
cccaccggcggcggcaagtccctgtgcttccaggtcccggcgctgatgcgcgacgggctg
gcggtggtggtttcgccgctgatcgcgctgatggaggaccaggtcgccaccctcgacgag
ctcggcgtggccgcggtggcgctgaactccaccctgagcaacgacgagcagcgcgatatc
gccgatcgcatccgccggggcgagatcaagatgctctacctggcgccggagcgcctggtg
cagccgcgcatgctgggcttcctgcagaacctggacatcgccctgttcgccatcgacgaa
gcccactgcgtttcccagtgggggcacgatttccgtccggaatacctgcagctgggccag
ctcgccgagctgttccccgaggtgccgcgcatcgccctgaccgccacggcggacatgcgc
acccgcgaggagatcgtgcagcgcctgcacctgcagaacgccgagcgcttcctctcgagc
ttcgaccggccgaacatcttctaccgcatcgtcgccaaggacagcccgcgcaagcagttg
ctgtccttcctcaccgagcggcgtggcgacgccggcatcgtctattgcctgtcgcgcaag
aaggtcgacgaggtcgccgccttcctttccgagcagggctacccggcgctgccctaccac
gcgggcctgcccagcgacctgcgggcctaccaccagaagcgcttcctcaacgaggagggg
ctgatcatggtggcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttc
gtcgcccacctcgacctgcccaagtccctggaggcctattaccaggagaccggccgcgcc
ggccgtgacggactgcccgccgatgcctggatggcctacggcctgcaggacgtactgctg
ctcaagcagatgctcaacaactccgagggcgacgagcgccacaagcgcatcgagcagcac
aagctcgacgccatgctggcgctgtgcgaggagatccgctgccgccgccaggcgctgctg
gcctatttcgacgaggagctgccgcaaccctgcgggcattgcgacatctgcgtcgacggc
gtgcagacctgggacgccaccgagcccgctcgtcaggcgctctcggccatctaccgcagc
ggccagcgctacggcgtcggccatctggtcgacctgttgctgggccgcgacaacgagaag
gtccgcgccgccggccaccagcacctgtcggtcttcggcatgggcaaggcgctgtccgaa
ggcgaatggcgcacgctgttccgccagctggtcgcccgtggcctggcggatgtcgacctc
gacggcttcggcggcctgcgcctgaccgacgcttgccgcccgctgctgcgcggcgaggtg
agcctgcaactgcgccgcgacctctcgaccaaggcaccgaagccggcggccagtgccgcc
agccagctggtgcgtggcgaggagcgcgagcagtgggaggccctgcgcgccctgcgccgc
aagctcgccgaggagcacagcgtgccgccctatgtgatcttccccgacgccaccctgctg
gagatgctgcgcagcaagcccggcaccctggcggagatggcgcgggtcagcggcgtcggt
gcacgcaagctggagcgctacggcgaggccttcctcgacgtgctcaacggtggcgccgac
gccgcgccggcgccgcgcgcggtggccgacctgcgtcacgagctggtcagcctggcccgt
gcgggcatgaccccggcgcagatcgcgcgccagctcgactgcaccgagaagaacgtctat
tcgctgctggccgaggccatcagcgagcagcagctgagcctggagcaggcgctggacctg
cccgaggaaatgctcggcgcggtgcaggacgccttcctcgatggcgagggcgagctgccc
agcgtcgccgaggtggccgagatgctcggcggcaaggtccccgagggcgtgctccactgc
gtgcgtgccgcgctgcaggccgagttcgagtcctga
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