Pseudomonas tohonis: TUM18999_18430
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Entry
TUM18999_18430 CDS
T07887
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM18999_18430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptw03019
]
TUM18999_18430
03009 Ribosome biogenesis [BR:
ptw03009
]
TUM18999_18430
Enzymes [BR:
ptw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TUM18999_18430
Messenger RNA biogenesis [BR:
ptw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TUM18999_18430
Ribosome biogenesis [BR:
ptw03009
]
Prokaryotic type
rRNA processing factors
TUM18999_18430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BCG23652
UniProt:
A0A6J4E1M3
LinkDB
All DBs
Position
complement(2010073..2013138)
Genome browser
AA seq
1021 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGAD
RHGFLPLKEISREYFKKSPEGRVNIKDVLNEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIR
QVMPQYQNKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEVMNGQSSYEMTPTETEDHQPAAATRTLVRQEAAVKTVAPERPAPAPLAPPTA
AVAAAEPSLFKGLVKSLVGLFAGKEEAQPAATEKSTSSERTARTEERRNGRQQNRRRDGR
EGREERKPREERQPREAREPREPREGQENRRERGERPPREERQPREDRQPREAREPREPR
EERAPREPREERQPREERQPREERAPREAREPREPREPREGQENRRERGERPPREERQPR
EERAPRTEQAAEPSEEELLNNEELLDDDQEGADGERPRRRSRGQRRRSNRRERQREVEGE
EGVEGSEEATVEGSAPAAVAVTSVAASVIAEQAEGQASSEPTPVENATSEAPAAASVAET
IAQEQEPAAVVETSAPAVIESEVSVVVAEPTVETVAVEAPVDVVPAAETVAEIETPAPVE
AEPVSAPAAAPVSAGGRAPNDPREVRRRQQEAERLAREAAAAPAVAAPVVEEAAPAVVEV
AAEQEPVAEAQVEPVVEASVEAPEVAEEPKVEVTQASSATEEAVAEATKEEEAKDESKPT
V
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcagcccgaagagttgcgtgttgccctggtcgacggccaacgc
ctgtatgacctggatatcgagtcgggcgcccgtgaacagaaaaaggccaacatctacaaa
ggccgcatcacccgcatcgagcccagcctcgaggccgcattcgtcgacttcggcgccgat
cgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaagtcccccgag
gggcgcgtcaacatcaaggacgtgctcaacgaaggccaggaagtgatcgtccaggtcgag
aaggaagagcgtggcaacaagggcgcagccctgaccaccttcatcagcctcgccggccgc
tacctggtgctgatgccgaacaacccgcgtgccggtggcatctcccgtcgcatcgagggc
gaagagcgcaacgaactgcgtgaagccctgaacggcctgaacgcccctgccgacatgggc
ctgatcgtgcgcaccgccggcctgggccgctccagcgaagagctgcagtgggacctggac
tacctgctgcagctgtggagcgccatcaaggaagcctccggcgagcgcggcgcgccgttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgtgactacctgcgccaggac
atcggtgaagtactggtcgacagcgtggaagcccaggaagaagccctgagcttcatccgc
caggtgatgccgcagtaccagaacaagatcaagctctatcaggacagcgttccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgaagtgaagctgccg
tccggtggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgtgcgaccaaaggcggtgacatcgaagaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgcgatatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgcgctgtggaagaaaaggtccgcgaagcc
ctggaagccgaccgcgcccgcgtccaggtcggtcgcatctcccgcttcggcctgctggaa
atgtcccgccagcgcctgcgcccgtccctcggcgagagcagcggcatcgtctgcccccgt
tgcaacggccagggcatcatccgtgacgtcgagtccctgtcgctggcgatcctgcgcctg
atcgaggaagaggccctgaaggaccgcaccgcggaagttcgcgcccaggtgccgatcccg
gttgccgccttcctcctcaacgagaagcgcaacagcatcaccaagatcgagctgcgtacc
cgcgcccgcatcgtcatcctgccgaacgaccatctggagacgccgcacttcgaagtgcag
cgcctgcgcgatgacagcccggaagtgatgaacggccagtccagctacgagatgaccccg
accgaaaccgaggatcaccagccggccgccgccacccgtaccctggtccgccaggaagcc
gcggtgaagaccgtcgcccccgagcgccctgccccggccccgctggctccgccgaccgcc
gctgtcgccgcggccgaaccgagcctgttcaagggcctggtgaagtcgctggtaggcctg
ttcgccggcaaggaagaagcccaacccgccgcaaccgagaagagcacctccagcgagcgc
accgcccgcaccgaggagcgccgtaacggtcgtcagcagaaccgccgccgtgacggccgt
gaaggtcgcgaagagcgcaagccgcgtgaagagcgccagcctcgcgaagcccgcgagccg
cgtgagcctcgcgaaggccaggaaaaccgccgtgaacgtggcgagcgtccgccgcgcgaa
gagcgccaaccgcgtgaagaccgccagcctcgcgaagcccgtgagccgcgtgagccccgt
gaagagcgcgcaccgcgtgagcctcgcgaggagcgtcagcctcgtgaagagcgccagccg
cgtgaagaacgtgcaccccgcgaagctcgtgagccgcgcgagccacgtgaaccccgcgaa
ggccaggaaaaccgccgcgaacgtggcgagcgtccgccgcgcgaggagcgccagccccgt
gaagagcgcgcaccgcgcaccgagcaggcagccgagcccagcgaagaagaactgctgaac
aacgaagagctactggatgatgatcaggaaggcgccgatggcgaacgtcctcgtcgtcgc
tcccgtggccagcgtcgtcgcagcaaccgccgcgagcgccagcgtgaagtcgaaggcgaa
gaaggcgtggaaggcagcgaagaggccactgtcgaaggcagcgctcccgctgccgtcgcc
gtgacctccgtcgcggccagcgtcatcgccgagcaggccgaaggccaagccagcagcgaa
ccgaccccggtcgagaacgccaccagcgaagcgcctgccgccgcatccgtcgccgaaacc
atcgcccaggagcaggaaccggccgcagtggtcgagaccagcgccccggccgttatcgaa
agcgaagtgtccgtcgtggttgccgaaccgaccgtcgaaaccgtcgccgtcgaagccccg
gtagacgtcgtaccggctgccgaaaccgtcgcggaaatcgagactccggccccggtcgaa
gccgagccggtctccgctcccgccgccgcaccggtcagcgccggtggccgcgcaccgaac
gatcctcgtgaagtgcgtcgtcgccagcaggaagccgagcgcctggcacgtgaagccgct
gccgctccggccgtagcagccccggtggttgaagaagccgccccggccgtggtcgaagtc
gccgctgagcaggagccggtggctgaagcccaggtcgagcctgtcgtcgaagccagcgtg
gaagccccggaagtcgctgaagagccgaaggtcgaagtgacccaggccagcagcgccacc
gaggaagccgttgctgaagcgacgaaggaagaggaagccaaggacgagtccaagccgacc
gtctga
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integrated database retrieval system
