Pseudomonas tohonis: TUM18999_30140
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Entry
TUM18999_30140 CDS
T07887
Symbol
icmF1
Name
(GenBank) type VI secretion protein IcmF
KO
K11891
type VI secretion system protein ImpL
Organism
ptw
Pseudomonas tohonis
Pathway
ptw02025
Biofilm formation - Pseudomonas aeruginosa
ptw03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
TUM18999_30140 (icmF1)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
TUM18999_30140 (icmF1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ptw02044
]
TUM18999_30140 (icmF1)
Secretion system [BR:
ptw02044
]
Type VI secretion system
Imp/Vas secretion system core components
TUM18999_30140 (icmF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
RHH_1
Motif
Other DBs
NCBI-ProteinID:
BCG24823
UniProt:
A0A6J4E4G8
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All DBs
Position
3314790..3318305
Genome browser
AA seq
1171 aa
AA seq
DB search
MKAFFSFLARWVIPVLGLIALSLVIWFVGPLIAIGDVEPLASATVRWVLIILLFAVWIGW
RVLRIIQARRNAAKVMQGLVAVAPDAASVATSEELATLKQRMDEALVLLKRAKLGGNERR
NLYELPWYVIIGPPGSGKTTALVNSGLNFPLAEQMGSGAIRGVGGTRNCDWWFTDEAVLL
DTAGRYTTQDSHAQVDKAAWLGFLDLLKNQRKRRPIDGAFVAISLSDLLLGSETERAAHA
RAIRARVQELYAQLGVRFPIYVMLTKLDLVPGFMEFFDSLSKEDRAQVWGMTFALDDGKS
AEGPLSVFGNEFALLEQRLNERLVERLQQERDPARRDLIYGFPQQFAALRDALSSFLDGV
FKPNPYEERALLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQHLARQTGTGRSYFIERL
FREVAFGERGLVGANPKVERQRKWMARGVLAATAILVLGIAALWFASFSANRTYIAAVDG
RVKPLHGELQGLSPAQRDVLAVLPLLNAIRNVSGDAPSWAEGYGLYQGDMLGAEGASVYR
KLLIAVMAPRVMARIEEQLRSGGSSDFLYEGLKAYLMLADPEHYDGDFIKAWVALDWDRS
LPRDLVPEQRQALNEHLAALYDREPPAVRLDDNLVQDTRRQLQQLSIAQRVYDRVKRQKL
PQGLPDFRISEAAGRDAALVFSRKSGKALNDPLSGFFTQRGYREVFMVSSLSQSGTLAEE
QWVLGRTMDDTQDAASLALEVRQLYFQDYLRQWDALLADIDFVAITSTAQAADVLRVLSG
PQSPLKKLLEAVAKETDLQKEERLAAEKLKGTSDTVGKLKDRLGSLVGQGDDAPQQPQAP
SEDPITAHFAELNSLVARNDNEPAAIDGLLADMNALYVQISAMSGASGDALLGEAKNQAQ
AAAQRVSLGAERQPPLVQGLVKSVVSATTSTMMGGIRNQLNAAWTAEVVNVYRQSLAGRY
PLDRNSTRDATLDDFGAFFGVGGVMDSYFRKYLQPYVDTSATTWRWQPGAAEKLGIGSGV
LGTFQRAAQIRDAFFRSGNTTPMVRFELKAVAMDAAIDQFQLDLDGQQFSYDHGPSRPVA
MQWPSPNSLGVVRLTISPPSSSGRSGITMEGPWAWFRLLDQSDLTQGNAPDRFTLRMRVD
NASISSELRASSAFNPFRSRVVTGFGLPERL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagtttcctcgcccgctgggtgataccggtgctgggcctgatcgcc
ctcagcctggtgatctggttcgtcggcccgctgatcgccatcggcgacgtcgagcccctg
gcttcggccaccgtgcgctgggtgctcatcatcctgctgttcgccgtgtggatcggctgg
cgcgtgctgcgcatcatccaggcccggcgcaacgccgccaaggtgatgcagggcctggtc
gccgtggccccggatgccgccagcgtggccaccagcgaagagctggccaccctcaagcag
cgcatggacgaggccctggtcctgctcaagcgcgccaagctcggcggcaacgagcgacgc
aacctctatgagctgccctggtacgtgatcatcggtccgccgggctccggcaagaccacc
gcgctggtcaactccggcctcaacttcccgctggccgagcaaatgggcagcggcgccatc
cgtggcgtcggcggcacccgcaactgcgactggtggttcaccgacgaggccgtgctgctc
gacaccgccggccgctacaccacccaggacagccacgcccaggtggacaaggccgcctgg
ctgggcttcctcgaccttttgaagaaccagcgcaagcgccgccccatcgacggtgccttc
gtggccatcagcctgtccgacctgctgctgggcagcgagaccgagcgcgccgcccacgcc
cgtgccatccgcgcccgggtgcaggagctctacgcccagctcggcgtgcgcttccccatc
tacgtgatgctcaccaagctcgacctggtgccgggcttcatggagttcttcgactcgctg
agcaaggaagaccgcgcccaggtctggggcatgaccttcgccctcgacgacggcaagagc
gccgagggcccgctgtcggtgttcggcaacgagttcgccctgctcgagcagcgcctcaac
gagcgcctggtggaacgcctgcagcaggaacgcgaccccgcgcggcgcgacctgatctac
ggcttcccgcagcagttcgcggccctgcgcgatgcgctgtcgagcttcctcgacggcgtg
ttcaagcccaacccctatgaagagcgcgcgctgctgcgtggcgtctacttcaccagcggc
acccaggaaggcagccccatcgaccgcctgatcggcgccatggcgcagagcatgaacctc
gaccgccagcacctggcccgccagaccggcaccgggcgcagctacttcatcgagcggctg
ttccgcgaagtggccttcggcgagcgcggcctggtcggcgccaaccccaaggtcgagcgc
cagcgcaaatggatggcccgcggcgtgctcgccgccaccgcgatcctggtcctgggcatc
gccgccctctggttcgccagcttcagcgccaaccgcacctacatcgccgccgtcgacggt
cgggtcaagccgctgcacggcgagctgcagggcctgagcccggcacagcgcgacgtgctc
gcggtgctgccgctgctcaacgccatccgcaacgtgtccggcgatgcgccgagctgggcg
gaaggctacggcctctaccagggcgacatgctcggggccgaaggcgccagcgtgtaccgc
aagctcctgatcgcggtgatggccccccgggtcatggcccgtatcgaggaacagctgcgc
agcggcggctcctcggacttcctctacgagggccttaaggcctacctgatgctcgccgac
ccggaacactacgacggcgacttcatcaaggcctgggtcgccctggactgggaccgcagc
ctgccgcgcgacctggtgcccgagcagcgccaggcgctcaacgagcacctggccgcgctc
tacgaccgggaaccgccggccgtgcgcctggacgacaacctggtgcaggacacccgtcgc
cagctgcagcagctgtccatcgcccagcgcgtctacgaccgcgtcaagcgccagaagctg
cctcagggcctgccggacttccgcatcagcgaagccgccggccgcgacgccgccctggtg
ttctcgcgcaagagcggcaaggcgctgaacgacccgctgtcgggcttcttcacccagcgc
ggctaccgcgaagtgttcatggtctccagcctgagccagtcgggcaccctggccgaggag
caatgggtgctcggccgcaccatggacgacacccaggacgccgccagcctggccctggaa
gtgcgccagctgtacttccaggactacctgcgccaatgggacgcgctgctggccgacatc
gacttcgtcgccatcaccagcaccgcccaggccgccgacgtgctgcgcgtgctgtccggc
ccgcagtcgccgctgaagaagctgctcgaagccgtggccaaggagaccgacctgcagaag
gaagagcgcctggccgccgagaaactcaagggcaccagcgacaccgtcggcaagctcaag
gatcgcctcggctccctggtggggcagggcgacgacgccccgcaacagccgcaggcgccg
agcgaggacccgatcaccgcgcacttcgctgagctcaacagcctggtggccaggaacgac
aacgagccggcggccatcgacggcctgctggcggacatgaacgccctctacgtgcagatc
agcgccatgagcggtgccagcggcgacgccctgctgggcgaggcgaagaaccaggcccag
gccgccgcccagcgcgtcagcctcggtgccgagcgccagccgccgctggtccaggggctg
gtcaagtccgtggtcagcgccaccaccagcaccatgatgggcggcatccgcaaccagctg
aacgccgcctggacggccgaagtggtcaacgtctaccgccagtccctggccgggcgctac
ccgctggaccgcaacagcacgcgcgatgccaccctggacgacttcggcgccttcttcggc
gtcggcggggtgatggacagctacttccgcaagtacctgcagccctacgtcgacacctcc
gccaccacctggcgctggcagccgggggcggcggagaagctcggcatcggctccggcgtg
ctgggcaccttccagcgtgccgcgcagatccgcgacgccttcttccgctccggcaacacc
acgcccatggtgcgcttcgagctgaaggcggtggccatggacgccgccatcgaccagttc
cagctcgacctggacggccagcagttcagctacgaccacggccccagccggccggtggcc
atgcagtggccgagccccaacagcctgggtgtggtgcgcctgaccatctcgccgccgtcg
tccagtggccgttcgggcatcaccatggaaggcccctgggcctggttccgcctgctcgac
cagtcggacctcacccagggcaacgcgccggaccgcttcaccctgcgcatgcgcgtggac
aacgccagcatctccagcgagctgcgcgccagcagtgccttcaacccgttccgcagccgc
gtggtcacaggcttcggcctgccggagcgcctatga
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