Pseudomonas tohonis: TUM18999_37190
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Entry
TUM18999_37190 CDS
T07887
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM18999_37190 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptw03019
]
TUM18999_37190 (deaD)
03009 Ribosome biogenesis [BR:
ptw03009
]
TUM18999_37190 (deaD)
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TUM18999_37190 (deaD)
Messenger RNA biogenesis [BR:
ptw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM18999_37190 (deaD)
Ribosome biogenesis [BR:
ptw03009
]
Prokaryotic type
rRNA helicases
TUM18999_37190 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
HrpB7
Motif
Other DBs
NCBI-ProteinID:
BCG25528
UniProt:
A0A6J4E7Y9
LinkDB
All DBs
Position
complement(4133068..4134747)
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AA seq
559 aa
AA seq
DB search
MTQDIGGFAALGLHPNVLAAISAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLNVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDEQMLATVQQLVLDEADEMLKLGFMDDLEVIFQALPES
RQSVLFSATLPPSIRSIAERHLKEPQHVKIAAKTQTVARIEQAHLMVHADQKVGAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVVNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPNAQQVLDARIKKLTASLAPLVADAEASHGELLDRLIADIGCSPRAL
AAALLRKATNGQALNLADVEREQPLVPSASQPRERRERDGERSTERSEYRERRAPLPLTE
GRVRCRTALGTRDGIAAKNLLGAILNEGGLARDAIGRIQIRETFSLIELPEDGLDRLLGK
LKDTRVAGKSLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggatatcggcggattcgccgcgctcggacttcatcccaacgttctcgcagcc
atctcggctgtcggctatgaagagccatctcccatccaggcccagtcgattccggtgatc
ctcgccggccacgacatgattggccaggcccagaccggtaccggcaagacagcagccttc
gcgctgcccatcctctcccgtatcgatccggccaaacgcgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagtcgccaccgctttcgaaacctacgccaagcag
atgccaggcctgaacgtggtcgccgtctatggcggcgcgcccatgggcccgcagctcaag
gccctgcgccagggcgcccaggtgatcgtggccacccccggccgcctgtgcgaccacctg
cgccgtgacgagcagatgctcgccaccgtgcagcaactggtcctggacgaagcggacgaa
atgctcaagctcggcttcatggacgacctggaggtgatcttccaggccctgccggaaagt
cgtcagagcgtgctgttctccgccaccctgccgccgtcgatccgttcgatcgccgagcgt
cacctgaaagagccgcagcacgtcaagatcgccgccaagacccagaccgttgcccgcatc
gagcaggctcatctgatggtccatgccgaccagaaggtcggtgccgtgctgcgcctgctg
gaagtcgaggaattcgacgccctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctggcttccgccctggaagccaagggctacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgagtccctcaaggacggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggtatcgacgtaccgcgcatcacccacgtggtgaacgtg
gacatgccgtacgaccccgagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgtgatggtcgtgcactgctgctggtcaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgcgtgaccaaccagaaggtcgccgaagtgcgcctgcccaacgcccagcaggtgctg
gacgcgcgcatcaagaagctgaccgccagcctcgcgcccctggtggccgatgccgaggcc
agccatggcgagctgctggatcgcctgatcgccgacatcggctgcagcccgcgtgccctg
gccgcagcgctgctgcgcaaggccaccaacggccaggcgctgaacctcgccgacgtcgag
cgcgagcagccgctggtgccgagcgcctctcagccgcgcgagcgtcgtgagcgtgatggc
gagcgcagcactgagcgcagcgagtaccgcgagcgtcgtgccccgctgccgctgaccgaa
ggccgcgtgcgttgccgcaccgcgctggggactcgtgacggcatcgccgcgaagaacctg
ctcggcgccatcctcaacgagggtggcctggcacgtgacgccatcggtcgcatccagatc
cgcgagaccttcagcctgatcgagttgccggaagacggcctggatcgcctgctgggcaag
ctcaaggacacccgcgtcgcgggcaagtccctgaagctgcgccgctatcgcgaagactga
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