Pseudomonas tohonis: TUM18999_46120
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Entry
TUM18999_46120 CDS
T07887
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03030
DNA replication
ptw03430
Mismatch repair
ptw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM18999_46120 (dnaE)
03430 Mismatch repair
TUM18999_46120 (dnaE)
03440 Homologous recombination
TUM18999_46120 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptw03032
]
TUM18999_46120 (dnaE)
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_46120 (dnaE)
Enzymes [BR:
ptw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TUM18999_46120 (dnaE)
DNA replication proteins [BR:
ptw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TUM18999_46120 (dnaE)
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TUM18999_46120 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BCG26421
UniProt:
A0A6J4EDF6
LinkDB
All DBs
Position
complement(5072819..5076343)
Genome browser
AA seq
1174 aa
AA seq
DB search
MTVAFVHLRLHSEYSLVDGLVRVKPLIKAVASAGMPAVAITDQSNMCSLVKFYKAAMGGG
VKPICGADIWLASPYEDGPLTRMTLLVMNAKGYRNLTELVSRGWSEGQSNDLVIIQREWV
KEAAEGLIALSGSKEGEIGMALLSGDQAGAEALLAEWQAVFPDRFYLELQRTARVNDEEH
VHAAVALADRCGAALVATNDVRFIKPGDFEAHETRVCIGEGRVLDDPRRPRNFSDQQYLK
TPEEMAELFADIPEALQNTVEIAKRCNIEVQLGKHFLPDFPTPNGMGIDDYLRHASYEGL
EERLAVLWPKETTPDYEEKRQLYIDRLEFELGTIIQMGFPGYFLIVADFIQWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
ADKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEAAYNQE
EALRDFLKADEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEMINREQEKKGLPLVDIDRIPLDDKKTYD
MLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCSSNGIDPNLSGNIFDLVEKFAGYGFNKSHSAAYGWVSYQTAWLKAHF
PSPFMAAVLTADMHNTDKVVTLIEECRNMKLRIVAPDVNNSEYRFTVDDAGQIIYGLGAI
KGVGEGPVEAITECRAEGGPFKDLFDFCNRIDLKRVNKRTLDALIRGGALDRLGPFFSEE
PKAYQAGIDRNRAVLLASMEEAIQAAEQTARSHDSGHMDLFGGLFAEPEADMYANHRNAK
ELSLKERLKGEKDALGIYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTIAGLIVNLRV
MKNKKGDKMGFITLDDRSGRIEASLFADAFNSASALLQTDALVVVEGEVSHDDFSGGLRL
RAKRVMSLEEARTGLAESLRMKVDHSALQGDRLRWLAELCNRHRGSCPITLDYSGASAKA
LLQFGEQWRIDPADALIQALRDQFGRDNVFLHYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcgccttcgtccatctccgtctgcattccgaatattcactcgtcgacggcctg
gtgcgggtcaagccgctgatcaaggccgtggcgagcgccgggatgcccgccgtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaaggccgccatgggcgggggc
gtcaagcccatctgcggtgccgacatctggcttgccagcccctatgaggatgggccactg
acgcgcatgaccctgctggtgatgaatgccaagggctaccgcaacctcaccgagctggtg
tcccggggctggtccgaaggccagagcaatgacctggtgatcatccagcgcgaatgggtg
aaggaggccgccgaaggcctgatcgccctgtcgggctccaaggaaggcgagatcggcatg
gccttgctcagcggcgaccaggccggcgccgaggcgctgctggccgagtggcaggccgtc
ttccccgatcgcttctacctggagctgcagcgcaccgcccgggtcaacgacgaggagcac
gtgcatgccgccgtcgccctggccgatcgttgcggcgcggcactggtggccaccaacgac
gtgcgcttcatcaagccgggcgatttcgaggcccacgagacccgcgtatgcatcggcgag
ggccgtgtcctcgacgacccgcgccgcccgcgcaacttctccgaccagcagtacctgaag
acccccgaggagatggccgagctgttcgccgacatccccgaggcgctgcagaacaccgtc
gagatcgccaagcgctgcaacatcgaagtccagctgggcaagcacttcctgcccgacttc
ccgacgcccaacggcatgggtatcgatgactacctgcgccacgcttcctatgaaggcctg
gaggagcgcctggcggtgctctggccgaaggagacgactccggactacgaggagaagcgc
cagctctacatcgaccgcctggagttcgagctgggcaccatcatccagatgggcttcccc
ggctacttcctgatcgttgccgacttcatccagtgggcgaagaacaacggcgtgccggtg
ggcccggggcgcggctcgggcgccggttcgctggtcgcctacgtgctgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgaacgcttcctcaaccccgaacgggtctcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgcgtgatcgactacgtg
gctgacaagtacgggcgcaatgcggtgagccagatcatcaccttcggctccatggcggcg
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcctggccgatcgc
ctctcgaagatgatcccgttcgaagtgggcatgaccctggaggcggcctacaaccaggag
gaggcactgcgcgacttcctcaaggccgacgaggaagcccaggaaatctgggacatggcc
ctgaagctcgaaggcatcacccgcggtaccggcaagcacgccggcggcgtggtgatcgcc
ccgaccaagctcaccgacttctcgcccatcgcgtgcgacgaggagggcggtggcctggtg
acccagttcgacaaggatgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcggacgctgacgatcatcaagtgggccatggagatgatcaaccgcgagcaggagaag
aaaggcctgccgctggtggacatcgaccgcatccccctggatgacaagaaaacctacgac
atgctgcagaaggcggagaccaccgcggtcttccagctcgaatcccgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaggacatgatcgccctcgtggcgctgttc
cgtccggggccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgt
gccgagctctcctacccgcacccggactaccagtacgccggcctcgagccggtgctcaag
cctacctacggcatcatcctgtaccaggagcaggtgatgcagatcgcccaggtgatggcg
ggctacacccttggcggcgcagacatgctgcgccgcgcgatgggcaagaagaagcccgag
gagatggccaagcagcgtggcggcttcatcgagggctgctccagcaacggcatcgacccg
aacctgtcgggcaacatcttcgacctggtggagaagttcgccggctacggcttcaacaag
tcccactccgccgcctacggctgggtctcctaccagaccgcctggctcaaggcgcacttc
ccgtcgcccttcatggccgcggtactcacggcggacatgcacaacaccgacaaggtggtg
acgctgatcgaagagtgccggaacatgaagctgcggatcgtggcgccggatgtgaacaac
tccgaataccgcttcaccgtcgatgacgccggacagatcatctatggccttggcgcgatc
aagggcgtgggcgagggcccggtggaggcgatcaccgaatgccgcgccgaaggtggcccg
ttcaaggatctcttcgacttctgcaaccgcatcgacctcaagcgcgtcaacaagcgcacc
ctggacgccctgatccgcggtggtgcactggatcgcctgggcccgttcttcagcgaagag
cccaaggcctaccaggccggcatcgaccgcaaccgggcggtgctcctggcgtccatggag
gaggccatccaggccgcggagcagaccgcgcgcagccacgacagcgggcacatggacctg
ttcggcggcctgttcgccgagcccgaggcggacatgtacgccaaccaccgcaacgccaag
gagctgtcccttaaggagcggctcaagggcgagaaggatgccctggggatctacctcacc
gggcacccgatcgacgagtacgagggcgaggtgcgtcgcttcgcccgccagcgcatcgtc
gagctgaagcccgcgcgtgacacccagaccatcgccggcctgatcgtcaacctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcatcaccctcgacgaccgctccggtcgc
atcgaggcgtcgctgttcgccgatgccttcaactccgccagcgcgctgctgcagaccgat
gcgctggtggtggtcgagggcgaggtcagccacgacgacttctccggcggcctgcgcctg
cgcgccaaacgcgtgatgagcctggaagaggcccgcacagggctggccgagagcctgcgc
atgaaggtcgaccacagcgctctccagggtgaccgcctgcgctggctggccgagctgtgc
aaccgccatcgcggctcctgcccgatcacgctggactacagtggagcgagtgccaaggcg
ttgctgcagttcggcgagcagtggcggatcgatcccgctgacgctttgattcaggcattg
cgtgaccagttcgggcgcgacaacgtcttcctgcactaccgctga
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integrated database retrieval system
