Pandoraea thiooxydans: ABW99_00975
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Entry
ABW99_00975 CDS
T03947
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ABW99_00975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_00975
Enzymes [BR:
ptx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ABW99_00975
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABW99_00975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AKJ67015
UniProt:
A0A0G3EJC1
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All DBs
Position
1009244..1012591
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AA seq
1115 aa
AA seq
DB search
MLSLFFSNRYENLAAALLRDIAAPPADPLAREVIVVPSAAVRRRLELDYAQCFGVCANVQ
FAYLAQWLWEQLGRALPVPQASPFAPDRLVWPIYRCLIDDGWTGDFPRLNAYLRQADPVM
RYELADRLASLFDQYLTYRLPWLSQWQRGASIAPASPASSEHWGPSQFEDERWQAELWRQ
LLTRLEIAGEHPAQRFIEILRTLPAGRVPPGWPARVAVFALPAMPPLSMQLLKELSRLID
VRIYALNPCQEYWFEIVPAARLSYLQARGASGYHETGHPLLAEWGRQTQSHIDLLYAEMA
EGALRDDAVFTPNPASTLLAALQNGILALAPQPEADRPNAGDGSLAVHACHSLARQLEVT
HDQLLDWFEADSSLRPDDILIAVPDLSQAAPLIDAVFGTASPRIPYLITGLPVSRTNTVA
RAIRQLLGLPQRRIGAADIIEFIRTEAVAHQFQFDEAALEQIQQWLRAAGARRGWASEPL
MRLARAGASSGAARTEQHHTLGDALMRLLLGYAQPDDAMPSADWLPIGGIEGGRAQALGS
LAGVVDALEASARVLDQVRTPLAWRDVLLRLLETFFSADAAFADDVAEVRHAIDQLCATM
HDGAPDTDLPVGVIDAALASWLDDPARGGVPSGRVTFAALPSLRALPYRVVCLLGMDDGV
LPGLRRGDEFDLMHALPQRGDRQRRDDERNLFLDLLLAARERVLIAYNGRSIRDNAMLPP
SAVVAELLDHLAEVLAGPGADEHGLAHRRASLVTEHPLQPFAPAYFDGASPRLFSYDAMQ
AETARVIIGAGAAPRDEAAFYQTPLPPPQAHPDTLELDDLLRFWRHPTRVWMRERLGVAL
REAEAELDDDEPFEVDAEGRRAFAERVLPRLLAGEPAPRVARIAAASHELPAGATGALWR
AREMSGLQLLAVAVRDALGAGSSAHAFSLPLTLRVAAEWPHEWQWPHGLACRLQGRLAPL
TPHGLVLYRYGRARASDYLDAWLRHLVLGVLVAGGELPGVAPRTHWFGNGERFTLRPVEN
PASQLSQLVALQHIGMTRPLPFFPRSAWELVSTGQLANAEKTWLGSQFSFGEGDQAYYRL
AWRGIDTPLADPFESIARAVCEPLAEHLVAGEDPV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgctttcactgtttttttcgaatcgctatgaaaacctcgcggcagccttgctgcgcgac
atagccgcgccgccggccgacccgctggcccgcgaagtcatcgtggtgcccagcgcggcc
gtgcgtcggcgtctcgaactcgattacgcacagtgcttcggcgtgtgtgccaatgtgcaa
ttcgcttatctggcgcaatggctgtgggagcaactcgggcgtgcattgccggtgccgcag
gcctcgccttttgccccggatcggttggtgtggccgatataccggtgccttatcgatgac
ggctggactggcgatttccctcgcctgaacgcctacctgagacaagccgatccggtcatg
cgctatgagttggccgatcgcctggcgagcctgttcgatcaatacctgacctaccggctg
ccctggctctcacaatggcagcgcggcgcctcgatcgccccggcgtcgcccgcgtcgtcg
gagcattgggggccttcgcagttcgaggacgaacgttggcaggccgagctatggcggcaa
ctgctcacgcggctggagatcgcgggcgaacatccggcgcagcgctttatcgagatcctg
cgcacgctgccggcgggtcgggtgccgcccggctggccggcgcgtgtcgccgtgttcgcg
ttgcccgcgatgccgccgctgtcgatgcaactgctcaaggagttgtcacgccttatcgat
gtacgcatctatgccctcaatccatgccaggaatactggttcgagatcgtcccggctgcg
cgcctgagctatcttcaggcgcgcggggcatccggttatcatgaaaccggccatccgctg
ctggccgagtggggccggcagacccagtcgcacatcgacctcctgtatgccgaaatggcc
gagggcgcgctgcgcgacgacgcggtattcacgccgaatccagcctcgaccttgctggcg
gcgctgcaaaacggcatccttgcgctcgcgccgcagccggaggccgacaggccaaacgcg
ggcgacggcagtctcgccgtacacgcctgtcacagtctggcgcgccagctcgaagtcacg
cacgatcagttgctcgactggttcgaggccgactccagcctgcgaccggatgacatactg
atcgccgtgcccgatctgagtcaggccgccccgctgatcgacgcggtattcggcactgcg
tcgccccgcatcccctatctgattaccggcctgccggtcagccgcaccaacacggtcgcg
cgcgccattcgtcagttgttggggctgccgcagcgccgtatcggtgccgccgacatcatc
gagtttattcgcacggaagcggtggcccaccagttccagttcgacgaggccgcgctcgag
cagatacagcagtggctgcgggcagccggcgcgcgccgcggctgggccagcgaaccgctg
atgcggctggcgcgcgcgggtgcatcttctggcgctgcccggacggagcaacaccacacg
ctgggcgatgccttaatgcgtctgctgctggggtacgctcagcccgacgacgccatgccg
agtgccgactggctgccgatcggcggcatcgagggcgggcgcgcacaggcgctgggcagt
ctggccggcgtggtcgatgcgctggaggcgagcgcccgggtgctcgaccaggtccgtacc
ccgctggcctggcgggacgttctgctcagactgcttgaaacgtttttctccgctgacgcg
gcctttgccgacgacgttgccgaggtgcgtcacgcgatcgatcagctgtgcgcgacgatg
catgacggtgcgcccgataccgacttgccggtcggtgtcatcgatgccgcgctcgccagc
tggctcgacgatccggcgcgcggcggggtgccgtcgggccgcgtgaccttcgcggcactg
cccagcctgcgggcgctgccctatcgtgtcgtttgcctgctgggtatggacgacggcgtg
ctgcctggcttgcggcgcggtgacgaattcgatctgatgcatgcattgccgcagcggggc
gaccggcagcggcgcgacgacgaacgcaacctgttcctggatttgctgctcgccgcgcgc
gagcgtgtactgatcgcctacaacggacgcagcatccgagacaacgccatgctgccgccg
tcggcggtggtcgctgaactgctcgatcacctggccgaagtgctggccgggccaggcgcc
gacgagcacggtttggcgcaccgccgggcgagcctggtcaccgagcatccgctgcagccg
ttcgcgccggcttatttcgacggggcctcgccgcggctgttcagctacgacgcaatgcag
gccgaaaccgcccgcgtgataatcggcgccggtgccgcgccgcgtgacgaagcggccttc
tatcaaacgccgttgccgcccccgcaggcgcaccccgacacgctggaactcgatgatctg
ctgcgtttctggcgccacccgacccgtgtctggatgcgcgagcgcctgggcgtggcgctg
cgcgaggccgaggccgagctggacgacgacgagcccttcgaagtcgatgccgagggccgc
cgtgcgtttgccgagcgtgtgctgcctcgcctactggccggcgagccggcgccgcgtgtg
gcgcgcatcgccgcggccagccacgaactgcccgccggcgcgaccggcgctttgtggcgc
gcgcgggagatgagcgggctgcaactgctggccgtcgcggtgcgtgacgcgctgggcgcc
ggcagtagcgcgcatgcgttcagcctgccgctcacgctgcgggtcgccgccgagtggccg
catgagtggcaatggccgcatggcctggcatgtcgcctgcaaggccggttggcccccctg
acgccgcacggtctggtgctgtaccggtacggtcgggcacgcgcgagcgactatctcgac
gcctggcttcggcatctcgtcttgggggtgctcgtcgcaggcggtgaattgcctggcgtg
gcgccgcgcacgcactggttcggtaacggcgagcgctttaccctgcgaccagtagagaat
ccggccagccagctctcgcaactggtcgcgctgcaacacatcggtatgacccggccgctg
ccatttttcccgcgcagcgcgtgggaactggtgagcaccgggcaactggccaacgccgaa
aagacctggctgggctcgcagttctcctttggcgagggggaccaagcgtattaccggctg
gcgtggcgcggcatcgacacgccgctggccgatccgttcgagagcatcgcacgcgccgtg
tgcgagccgttggccgagcatctcgttgcgggggaggacccggtatga
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