Pandoraea thiooxydans: ABW99_01075
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Entry
ABW99_01075 CDS
T03947
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABW99_01075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptx03019
]
ABW99_01075
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_01075
Enzymes [BR:
ptx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABW99_01075
Messenger RNA biogenesis [BR:
ptx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABW99_01075
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABW99_01075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AKJ70283
UniProt:
A0A0G3ET79
LinkDB
All DBs
Position
complement(1039741..1041567)
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AA seq
608 aa
AA seq
DB search
MATALDLLRTVFGYNAFRGDQADIVEHLAQGGDALVLMPTGGGKSLCYQIPALLRAGTGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLAGDAAADVERRLMRGELDLLYVAPERLLTD
RFLGQLDRLDQQNRIALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPAVPRIALTATAD
TATRDEIRVRLGLENARVFVASFDRPNIRYEVVDRDNPRRQLLTFLARHRGEAGIVYCLS
RKKVEETADWLQAQGIAALPYHAGLDAELRRTHQQRFLRDEGLVMVATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMTYGLNDVVVHRGRIDESAAPETQKRIE
RQKLDAMLAYCEAARCRRAVLLDYFGETSAPCGNCDVCLNPPEVWDGTVAAQKALSAILR
TGQRFGAGHLIDLLRGRATDKIRQFGHEALPTFGVGAELDDTGWRAVFRQLLAHTIIEAD
ATRYGALILNPAARPVLKGERRLDFRRQRTPAGKAAARRGRLAGYGESSAHEELDIADQQ
VFERLRQWRQETARTQQVPAYVILHDRTLRELAQRRPAGQDALSEISGLGVAKIERYGEA
LLKVLAET
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcactcgatcttctccgcaccgtttttggctacaacgcatttcgcggcgat
caggccgatatcgtcgagcacctcgcgcaaggcggcgatgcgctggtgctgatgcccacc
ggcggcggcaagtcgctgtgctaccagattccagcgctgctgcgcgcgggcaccggcatc
gtggtgtcgccgctgatcgcgctgatgcaggaccaggtggacgcgctgctgcaagccggc
gtgcgcgccgcctatctgaactcgagcctggcgggcgatgcagccgccgacgtcgagagg
cgtctgatgcgcggcgagctcgatctgctttatgtggcgcctgagcgcctgttgaccgac
cgcttcctcggccagctcgaccgcctcgaccaacagaatcgcattgccctgttcgcgatc
gacgaggcgcactgcgtgtcgcaatgggggcatgacttccgccccgaatacattcaactc
tcggcgctgcacgagcgttatccggcagtaccccgcatcgccctgacggcaaccgccgac
acggccacgcgcgacgaaatccgcgtgcggctggggctggaaaacgcgcgcgttttcgtc
gccagcttcgatcggcccaatatccgttacgaagtcgtcgaccgcgacaatccccgccgt
caattgctgacgtttctcgctcgccatcgcggcgaagccggcatcgtctactgcctgtcg
cgcaagaaggtcgaggaaaccgccgactggctgcaagcccaggggatcgcggcattgccc
tatcacgcgggcttggacgccgaactccggcgcacccatcagcagcgctttctgcgcgac
gaggggctggtaatggtggccacggtcgccttcggcatgggcatcgacaagcccgacgtg
cgcttcgtggcgcatctggatttacccaagagcctcgaggcctattatcaggagaccggc
cgagccgggcgcgacggcgaaccggccgaggcctggatgacctacggcctgaacgacgtg
gtggtgcatcgcggccgcatcgacgagtcggccgcaccggagacgcaaaaacggatcgag
cggcaaaaactcgatgccatgctggcctattgcgaggcggcccgctgtcgccgcgccgtg
ctgctcgactacttcggcgagaccagcgcgccgtgcggcaattgcgacgtctgcctgaat
ccgccagaggtatgggacggcacggtggccgcgcaaaaagcgctgtcggcgattttgcgc
accggccagcgcttcggtgccggccacctgatcgatctgctgcgcggccgtgccaccgac
aaaatccgccagttcggccatgaagccctgcccaccttcggcgtcggcgcggagctggac
gacaccggctggcgcgcggtgtttcgtcaattgctggcgcataccattatcgaagccgat
gccacgcgctatggcgcattgattctgaacccggccgcgcggccggtgctcaagggcgag
cggcggctggattttcgccgccagcgcacgccggccggcaaagcggcagccagacgcggc
cggctggccggctatggcgagagtagcgcgcatgaagaactcgacatcgccgatcagcaa
gtcttcgagcgcttgcggcaatggcggcaggaaaccgcccgcacccagcaggtgccggcc
tatgtgatcctgcacgaccgcaccctgcgcgagctggcccagcgtcgcccggccggccag
gacgctctgtccgagatatcgggcctgggcgtggcgaagatcgagcgttatggcgaggcg
ttgctcaaggtgctcgccgagacctag
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