Pandoraea thiooxydans: ABW99_08855
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Entry
ABW99_08855 CDS
T03947
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptx
Pandoraea thiooxydans
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptx03019
]
ABW99_08855
Enzymes [BR:
ptx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABW99_08855
Messenger RNA biogenesis [BR:
ptx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABW99_08855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
AAA_22
NACHT
nSTAND3
T2SSE
AAA_30
AAA_25
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKJ68308
UniProt:
A0A0G3EMJ7
LinkDB
All DBs
Position
complement(2721920..2725927)
Genome browser
AA seq
1335 aa
AA seq
DB search
MPSDERNPQTRRPRPSGPIDPAATQPSAERRRAPRRQGAASAEPPVPATPVKQISFPEAL
PVSGKRQAIAEAIAGHQVVIVCGETGSGKTTQLPKICLSLGRGRGAGGAGLIGHTQPRRI
AASATARRIAEELNTPLGEVVGFKVRFNDTLAPGASVKLMTDGILLAETQSDPLLRAYDT
IIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIITSATIDADRFARHFGRPAGGDRQGEV
EPAPVIEVSGRLYPVEVRYRPIQEDSGNPAEGGRAAQRDRERDLIDGLVDAVDELCREGP
GDVLVFLPGEREIRETAEALRKHHPPHTEILPLFARLSAAEQERVFKPSNARRIVLATNV
AETSLTVPGIRYVVDSGLARVKRYSYRNKVEQLQIEAISQAAANQRAGRCGRVANGICIR
LYEEADFQARARFTDPEILRSSLAAVILRMQALRLAKVESFPFIEPPPPRAVADGYQLLA
ELGAVDDNNVLTPLGRELARLPLDPRVGRMILAARDQSALREVLIIASGLSVQDPRDRPI
DAQDAADQAHRKFVDEKSEFLSWLKLWRWFDEAIAHKKSNRLLAQACRDNFVSQLRLREW
RDVHSQLLTVVREQGWRLNEAEATYEQIHLALLAGLLGNIGCKADDEQYYLGAHGIKFHI
WPGSPLLKKAGRWVVAAELVETSRLFARCIARIEPEWLERVGGHLLRKSLSDPHWEKKAA
QVTAFERATLYGLTVYARRRIHFGPQDPKRAREIFIRSALVEGQFETRLPFFTHNRKLMA
EIEQLEHKSRRQDVLVDDELIYAFYDRHLPPDISQGVTLERWYREASRQQPKLLFLVRDD
LMRHEAAGVTTELFPKKIALAGIEMALSYHFEPGSPRDGVTLSIPLFSLNQVDVRRTEWL
VPGMLKEKVHLLLKSLPQKLRRHCVPLPEYAAGFVERVGEPKGALLDALIADVRERTTTQ
LKSADFKLETLPAHLSMNFKVIDEHGRQLGMGRNLAQLRAELGQQAQHIFQRIAAQSAVV
TAASQAAAPADGAPPAGTAPSRNGGSAPLEASRYEGLTAWTFGELPEMLEIRRGGQTLFG
YPALVDRTTHCDLEVFDDPAEAARMHLGGLRRLFALQLREQVKYLEKNIPGLQQMAMQYM
ALGTQEELRDQIIDEALTRACLQAPLPTDSAGFGARKDEGKARLNLLAQEIARLVGLILT
EYAAVQKKLPQAKAHGQAYADLQQQLQRLIGKRFIADTPYAQLAHFPRYLKAMTLRIDKL
KADAGRDARVAAELAPLLQNYQRALTQRRDQDDGRLDEFRWLLEELRVSLFAQELRTPMP
VSVKRLHKVWESLQR
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtgatgagcgtaatccacaaacccgccggccgcgaccgtccgggccgatcgat
ccggcggcgacccaaccgagcgccgagcgccggcgcgcgccccgtcgccagggcgcggca
tcggctgagccgcccgtgccggcgacgcctgtcaagcagatctcgttccccgaagcgttg
ccggtatcgggcaagcgccaggcgatcgccgaggcgatcgccggacatcaggtggtgatc
gtttgcggcgagaccggctccggcaaaacgacccagctgcccaagatttgtctgtcgctg
gggcgcggccgtggcgccggcggcgcagggctgatcggacacacgcaaccgcgccgcatt
gccgcatcggcgaccgcgcggcgcattgccgaggagctgaatacgccactgggcgaggtg
gtcggcttcaaggtgcgctttaacgatacgctggcgccgggggcgtcggtcaaattgatg
accgacggcattttgctggccgagacgcagtccgatccgctgttgcgcgcctacgatacg
atcattatcgacgaggcccacgagcgcagcctgaacatcgattttttgctcggctatctg
aagcagttgttgccgaggcggcccgatctgaagctgatcatcacctcggcgacgatcgac
gcggatcgcttcgcacggcattttggccgacccgcaggcggcgacaggcagggcgaagtc
gagccggcgccggtcatcgaggtcagcgggcgcctgtatccggtggaggtgcgctaccgg
ccgatccaggaagacagcggcaatcccgccgagggcgggcgggcggcgcagcgcgatcgg
gagcgcgatctgatcgatggcctggtcgacgcggtcgacgagttgtgccgcgagggtccg
ggcgacgtgctggtgtttttgcccggcgagcgcgaaattcgcgaaacggctgaagcgttg
cgcaagcatcatccaccgcataccgagattctgccgctgttcgcgcgcttgtcggcggcc
gagcaggagcgcgttttcaagccgtcgaatgcgcgccgtatcgtgctggcgacgaacgtg
gcggaaacctcgctgacggtgccgggcatccgctatgtggtcgatagcggcctggcgcgg
gtcaagcgctactcgtaccgcaacaaggtcgagcagttgcagatcgaggcgatttcgcag
gccgcggcgaaccagcgtgccggccgctgcgggcgggtcgccaacgggatctgtatccgg
ctttatgaagaagccgactttcaggcgcgggcgcgctttaccgatccggaaatcctgcgc
tcgtcgctggccgcggtgattctgcgcatgcaggcactgcggcttgccaaggtcgagtcg
tttccctttatcgagccgccgccgccgcgcgcggtggccgacgggtatcagttgctcgca
gagctcggcgcggtcgacgataacaatgtgctgaccccgctcggccgagagctggcccgc
ttgccgctggatccgcgcgtggggcgcatgattctcgccgcgcgcgatcagtcggcgctg
cgtgaagtgctgatcatcgccagcggactctcggtgcaggatccgcgcgatcggccgatc
gatgcgcaggacgccgctgatcaagcgcaccgcaaattcgtcgacgagaagtcggagttt
ctctcctggctgaaactatggcgctggttcgacgaggcgatcgcccacaagaaatcgaac
cgcctgctggcacaggcctgccgcgataatttcgtttcgcagttgcgactgcgcgaatgg
cgtgacgtgcatagccagttgttgacggtggtgcgcgagcagggctggcggctcaatgag
gccgaggcgacctacgaacaaattcacttggcgctgctggcgggcttgctcggcaatatc
ggttgcaaggccgacgacgagcagtattacctgggcgcgcacggcatcaagtttcatata
tggcccggctcgccgctgctcaagaaggccggccggtgggtggttgccgccgagctggtc
gagaccagccgcctgttcgcacgctgcattgcgcgcatcgagccggagtggctggagcgc
gtgggcggacacttgctgcgcaaatcgctgtcggatccgcattgggaaaagaaggccgcg
caggtcaccgcgttcgagcgcgccaccttgtacgggctgacggtgtatgcccggcgccgg
attcacttcggtccgcaggatccgaagcgtgcccgcgagatatttattcggtctgcgctg
gtagagggccagttcgagacacgcttgccgttcttcacccataaccgcaagctgatggcg
gagatcgagcagctcgagcataaatcgcgtcgccaggacgtgctggtcgacgacgagctg
atttatgctttttacgatcggcatttgccgcccgacatctcgcagggcgtgacgctcgag
cgctggtatcgcgaggcgtcgcgtcagcagccgaaattgctgttcctggtgcgcgacgat
ttgatgcggcacgaggcggccggcgtcacgaccgaactgttcccgaagaaaatcgcgctg
gccgggatcgaaatggcgttgtcctatcatttcgaaccgggctcgccgcgcgatggggtg
accttgagcataccgttgttttcgctcaatcaggtcgacgtccgccgtaccgagtggctg
gtgcccggcatgctcaaggagaaggtgcatctgctgctcaagtcgctgccgcagaagctg
cgccgtcactgcgtgccgttgcccgaatatgcggccggtttcgtcgagcgggtgggcgaa
cccaagggcgcgctgctcgacgcgctgatcgccgacgtgcgcgagcggaccacgacgcag
cttaaaagcgccgatttcaaactggagacgctgccggcgcatctgtcgatgaacttcaag
gtgatcgacgaacacggccggcagctcggcatgggccgcaatctggcgcaactgcgggcg
gaactcggtcagcaggcgcagcatattttccagcggatcgcagcgcaaagcgcagttgtc
accgccgcgagccaggccgcggcgccggccgatggcgcgccgccggcaggcacggcgccg
tctcggaacggaggctcggcgccgctcgaggcgtcccgctacgagggactgaccgcctgg
accttcggcgaattgccggagatgctcgagattcgccgcggcggccaaacgctgttcggc
tacccggcgctggtcgaccgcacgactcattgcgacctcgaggtgttcgacgacccggcc
gaggcggcgcggatgcatctgggcggactgcggcgcctgtttgcgttgcagctcagggag
caggtgaaatacctggagaagaacatccccggcctgcagcaaatggcgatgcagtacatg
gcgctgggtactcaggaggagctgcgcgatcaaatcatcgacgaggctttgacacgcgca
tgcctgcaggcgccgttgccgaccgattccgccggttttggggcgcgcaaggacgaaggc
aaggcacgtttgaatctgctggcgcaggaaatcgcccgattggtcggactgattctgacc
gaatatgccgccgtgcagaaaaagctgccgcaggccaaggcgcacgggcaggcttatgcc
gatctgcagcagcaattgcagcgcctgatcggcaagcgctttatcgctgacacgccctat
gcgcaactggcgcatttcccgcgttatttgaaagcgatgacgctgcgcatcgacaaactg
aaagccgacgccggtcgcgacgcgcgagtggcggcggaactggcgccgctgctgcaaaac
taccagcgcgctctgacgcagcgacgggaccaggacgatggccggctcgacgagtttcgc
tggctgctggaggagctgcgcgtgtcgctgttcgcgcaggaactgcgcacgccaatgccg
gtgtcggtcaagcgcttgcataaggtgtgggaatcattgcagcgctga
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