Pandoraea thiooxydans: ABW99_12810
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Entry
ABW99_12810 CDS
T03947
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABW99_12810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptx03019
]
ABW99_12810
03009 Ribosome biogenesis [BR:
ptx03009
]
ABW99_12810
Enzymes [BR:
ptx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABW99_12810
Messenger RNA biogenesis [BR:
ptx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABW99_12810
Ribosome biogenesis [BR:
ptx03009
]
Prokaryotic type
rRNA processing factors
ABW99_12810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKJ68955
UniProt:
A0A0G3EPT1
LinkDB
All DBs
Position
3609675..3612752
Genome browser
AA seq
1025 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARAFFRDGADVRNARIQDALSEGQEIIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLELPEGMSIIARTAGIGRAAEELQ
WDLNYLMQLWRAIEEAANSNRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTEDIHEQAR
AFMSVVMPDNLNRVKRYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEALVSI
DVNSARSTKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESTKAQREVEQR
VKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRAEINKIEARFKVGVLLIPNKHLETPH
YKLERVRHDDPRLEAPKASYVLAEDAARELEAEEPGYSKRKDEAKPRQEAAVKGITPDQP
APVSQPRQPRAPAPLEPAGGGFIGWVKRLLGLEPAAKAPIQEAPPAAAPRPARERQDRAP
QGRHRRNNRGEQPSGNGKDAMRPPREPREPRSENRQPRERDENRNAAPAQESANEGVQRE
QTREGRGRRPDRRERKPLDTEQEQRPRQPAQAPVSEPEVEAIAAAPAPIIDEASEAAGEE
RRRRRRGRRGGRREREPGEQTGAVPNTDLAAETAAPVAAPTAVDEVPAQTVTPTPVAHAP
AAVVEEAAAVAAVVAPAVAAVASESIPPAPAAAETSPAEAVTATPAAAEAIVATPEAAAD
RQPLETAPTPASIEAAPTIAPHALAPLPAEQAAPQPVQTVAPLPATQALPIEAEVAPEMP
AAPAAPSEAVEAVAPALPPVEAPAVEAPAVEAPVVAAPAASVEPRVSVSPDALESTLAAA
GLVWVHTDAEKQRQAQEAMAKIVVPPRAPRERKPLPPQVEGPMVQVETQPAATSAPVATT
GSTHI
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgccacgcagcaagaagaattgcgcgtggccatcgtcgat
ggtcagaaactcatcgacatcgatatcgagaccgcgggtcgcgagcaacgaaaaggtaat
atttacaaaggcgtcatcactcgcatagagccttctctggaagcctgtttcgtcaactac
ggcgaagatcgccacggtttcctcccattcaaggaagttgcccgcgcttttttccgtgat
ggcgccgacgttcgcaacgcccgcatccaggacgccttgtcggaaggccaggaaatcatc
gttcaggtcgagaaggaagagcgcggcaacaagggggcggccctcaccaccttcatttct
ctggcagggcgttacctggtcctcatgcccaacaaccctcgtggcggcggcgtatcgcgt
cgcatcgaaggcgaggatcgtcaggaattgcgcgaaaccatggcgcaactggagctgccc
gagggcatgagcatcatcgcccgcaccgccggcatcggccgtgccgccgaggaactgcaa
tgggacttgaactacctgatgcagttgtggcgcgcgattgaagaggccgccaacagcaac
cgcgccccgctgctgatctacctcgaatccagcctggtcatccgtgccatccgcgattac
ttccagccggatatcggcgagatcctgatcgacaccgaagacatccacgagcaggcccgc
gcctttatgagcgtggtcatgcccgacaatctgaaccgcgtcaaacgctatcgcgatgac
gttccgctcttctcgcggttccagatcgaacatcaaatcgaaaccgcttactcccgtcag
gttcccctgccctcgggcggcgcgatcgtcatcgaccacaccgaagcactggtgtcgatc
gacgtcaactcggcacgctcgaccaagggcgcggacatcgaggagacggcgctgcgcacc
aacctcgaagccgccgacgaagtcgcacgccagttgcgcctgcgggacctcggcggcttg
atcgtgatcgatttcatcgacatggagtcgaccaaggcgcagcgtgaggtcgagcagcgc
gtcaaggatgccctcaagcacgaccgtgcccgcgtccagatgggcaaaatttcccgattc
ggcctgatggaactgtcgcgtcaacgactgcgtccgtcgctgtccgaaggcactcacgtc
acttgcccgcgctgtaacggcacgggccatattcgcgacaccgagtcgtccgccttgcag
gtcctgcgcatcatccaggaagaggcgatgaaggagaacaccgccgccatccactgccag
gtgccggtcgaggtcgcggccttcctgctcaacgaaaaacgcgccgagatcaacaagatc
gaagcacgcttcaaggtcggcgtgctgctgatccccaacaaacatctcgagacgccgcac
tacaagctcgaacgcgtgcgccacgacgatcctcgcctggaagccccgaaagccagctat
gtcctggccgaggacgccgcgcgcgagctcgaagccgaagaacccggctacagcaaacgc
aaggacgaagcgaagccgcgccaggaagcagccgtcaagggcatcacgccggatcagccg
gcaccggtatcgcaaccgcgccagccgcgcgcacccgcgccgctcgaaccggccggtggt
ggtttcatcgggtgggtcaaacgtctgctgggactggaacccgctgccaaggcaccgatc
caggaggctccgccggcagcagcgccgcgcccggcccgcgagcgccaggatcgcgcgccg
caaggccgtcatcgccgcaataaccgcggcgagcagccgagcggcaatggcaaggacgcc
atgcgcccgccgcgcgaaccgagagagccgcgcagcgagaatcgccagccgcgcgagcgc
gacgaaaatcgcaatgccgcaccagcccaggaatccgccaacgaaggcgtacaacgcgag
caaacccgcgagggtcgcggtcgccggccggatcggcgcgaacgcaagccgctggatacc
gagcaggagcagcggccgcgtcaacccgcacaagcgcctgtcagtgagcctgaggtcgaa
gcaatagcggcggcgccggcgccaattatcgacgaggcatcggaagccgcaggagaagag
cgccgccgccgtcgtcgcggccgtcgcggcggccgccgtgagcgggaacccggcgaacag
actggcgcggttcccaataccgatctggccgccgaaaccgcggccccggtggcggcaccg
accgcggtcgatgaagtgcctgcccaaacggtgacaccgacgccggtcgcgcatgcgccg
gcagcggttgtcgaagaggctgcggcagtcgctgccgtcgtcgcgccggcggtcgccgcc
gtcgcgagcgagtccatcccgccggcacccgctgccgcagaaacgtcgccggctgaggca
gttacggcgacgcccgccgccgccgaggcgatcgttgcgaccccggaagccgcggccgac
cgacaaccgctcgaaaccgcaccgacgccggcaagcatcgaggcggctccgaccatcgcc
ccgcatgcgctcgcgccgctgcccgccgaacaagcggcaccccaaccggtgcaaaccgtc
gcaccgctgcccgcgacccaagcactgccgattgaagccgaggtagcgccggagatgccg
gcagcacccgcggcgccgagtgaagcggtcgaggcggttgctcctgcgctaccgccggtc
gaggcgccagcggtcgaggcgccagcggtcgaggcgccagtagtcgctgcgccggctgcc
agcgtcgaaccgcgagtatcggtctcacccgacgcactggaatccacgctcgccgcggct
ggtctggtgtgggtccacaccgatgcagaaaagcagcgccaggcacaggaagccatggcg
aaaatcgttgttccgccccgtgcgccgcgcgaacgcaagccgttgccgccgcaggtcgaa
ggtccaatggtccaggtcgaaacacaaccggcagccacctcggcgccggtggcgacgacg
ggctccacgcacatctga
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