Pandoraea thiooxydans: ABW99_13960
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Entry
ABW99_13960 CDS
T03947
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ptx
Pandoraea thiooxydans
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptx03000
]
ABW99_13960
Transcription factors [BR:
ptx03000
]
Prokaryotic type
Helix-turn-helix
Other families
ABW99_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_lid_14
AAA_2
HTH_Tnp_ISL3
AAA
HTH_50
HTH_23
AAA_5
PAS_4
HTH_30
HTH_11
AAA_16
TrmB
HTH_38
HTH_7
HTH_22
HTH_29
HTH_17
HTH_28
AAA_22
P22_Cro
MCM
AAA_3
NB-ARC
Phage_CP76
HTH_AsnC-type
HTH_Crp_2
HTH_IclR
CUE
HVO_A0261_N
CPPA
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
AKJ69151
UniProt:
A0A0G3EWL3
LinkDB
All DBs
Position
3856916..3858808
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AA seq
630 aa
AA seq
DB search
MIDQSHERSVSFGLSETMKPDYDLLGQHELRLQLARNRVLHAHAAPVMESLHEQIANTQS
MVVLTDPQGLILMSLGDDDFLSRAEKVALKPGALWSEEFQGTNAIGTAIAEMAPTTVHGD
QHFLRANHFLTCSSVPIIGPSGKLAGVLDVTGDHRSYHRHTMALVRMSAQMIENQLFANA
FPEAFLVRFHGRHEFLGTLMEGIAAFSRDGRFLSANRSAQFQLGLSLAALGAHTFSSLFG
ITPSAVFDHYRTAQPGLLKLCLNNGVRVFGKAEFQYTGLTLPTSIAAPEPAPLQTASDDG
TNAAKMRMRLSSLRYLDTGDPQITALIDKLRKVIGKDISIMITGETGTGKELLARAIHND
SPRRSGPFIAVNCASIPETLIESELFGYEEGAFSGARRKGGTGRVLQANGGTLFLDEIGD
MPISLQARLLRVLQERVVTPLGSTKSIAVNVAIICATNRNLREMIRTGSFREDLYYRLNG
MVARLPPLRERGDLEIVIAKILHDDLNVERRLHIDPEVMGLFRRYHWPGNFRQLSNVLRT
AAAIVDDDGHIRREHLPDDFLEDLSDIPAAPVMQLPSGNTRLDELEVSAIAAALRQHQGN
VSAVARMLGVSRNTIYRKMQALQLQGKTDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaccagtcgcacgagcgctccgtctcattcggtctgtcagagaccatgaagccg
gactacgatttgctcggccagcacgaattgcgtctgcaactggcgcgcaaccgcgtgctg
cacgcccacgccgcgccggtcatggaatcgctgcacgaacagatcgccaatacgcagagc
atggtcgtgctcaccgatcctcagggcctcattctgatgtcgctgggcgacgacgatttt
ctgagccgcgcggaaaaagtggcattgaagccgggcgcgctgtggagcgaggagttccag
ggcaccaatgcgatcggcaccgcaatcgccgaaatggcgccgaccaccgtacacggcgat
cagcacttcctgcgcgccaatcacttcctgacctgctcgagcgtaccgatcatcggtcca
agcggaaagttggcgggcgtgctcgacgtcactggagatcatcgaagctatcatcgccat
accatggcgctggtgcgcatgtcggcgcaaatgatagagaatcagttgttcgccaacgct
tttccggaagcatttctggttcggtttcacggccgccatgagtttctcggcacactgatg
gaaggcatcgccgccttctcgcgcgacggccgcttcctgtccgccaatcgcagcgcgcaa
ttccagctcggcttgagtcttgccgcgctaggtgcccacacgttctcgtcgttattcggc
atcacgccatcggcagtattcgatcattaccgcacggcgcagcccgggctcttgaagctc
tgcctgaataacggcgttcgggtcttcggcaaggccgaatttcaatacaccggattgacc
ttgccgacgagcatcgctgcgcccgaacccgcgcctttgcagaccgcgtcggatgacgga
acgaacgccgcaaaaatgcgaatgcgcctgtccagcctgcgctatctggacaccggcgat
ccacagatcaccgccttgatcgacaagctacgcaaggtaatcggcaaagacatttcgatc
atgatcaccggcgaaacgggcaccggcaaagagttgctggcgcgcgcgattcacaacgac
tcgccgcggcgcagcgggccgttcatcgccgtcaattgcgcatcgattccggaaacactg
atcgaatcggaactgttcggctatgaagagggcgctttttccggcgctcgcagaaaaggc
ggcacggggcgggtgctgcaggccaacgggggcacgctgtttctcgacgagatcggcgac
atgccgatttcattgcaggcgcgcttgctgcgcgtcttgcaagagcgcgtcgtgacgccc
ttgggcagcaccaaatcgatcgccgtcaatgtcgccatcatctgtgcgacgaaccgtaat
ttacgcgagatgattcggaccggctcgttccgggaagacctgtactatcggctcaacggc
atggttgccagactaccgccgctgcgcgagcgcggcgatctggaaatcgtcatcgccaag
atcctgcacgacgatctcaatgtcgagcgtcgcctgcatatcgaccctgaggtaatgggc
ttgtttcgccgctaccattggccggggaatttccgtcagttgagcaatgtgctgcgcacc
gccgcagccatcgtcgacgacgacggccatattcgccgcgagcatttgccggatgacttc
ctggaagatctgtcggacatccccgccgcgccagtcatgcaactgccgtccggcaacacc
cgcctcgacgaactggaagtatcggccatcgcggctgccttgcgccagcatcaaggcaac
gtttccgcagtcgctcgtatgctgggcgtctcccgcaataccatctatcgcaaaatgcag
gcgcttcaactgcagggcaagaccgacgcctga
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