Pandoraea thiooxydans: ABW99_14305
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Entry
ABW99_14305 CDS
T03947
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx02020
Two-component system
ptx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABW99_14305
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABW99_14305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptx03021
]
ABW99_14305
Transcription machinery [BR:
ptx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABW99_14305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF2344
HTH_38
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AKJ69207
UniProt:
A0A0G3EV24
LinkDB
All DBs
Position
3937231..3938718
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AA seq
495 aa
AA seq
DB search
MKPTLQLRTSQHLALTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEQADDWLSGSVRV
NTDGSLRSERGASAAEPPLGGSREAASPEGGGDQDGSDYGEPLRDTAGDWTLNDFSRNGN
AQDDDDASQPQLHVDQTSLREHLLAQLNLTQASQRDRALVGFLIESLDEDGYLGITLDEI
QHELLSELELETEELNAALALLQSFDPAGVGARNAAECLKLQLQRQPANAVRALALRIVQ
DHLELLAARDFTRLKRLLGASDAELRAAHAAIRALDPFPGSAYGGPTTDYVIPDVLVRKS
GKTWHAELNPEIMPKLRINEMYARILRSNRNDPGAGNLQQQLQEARWLIKNIQQRFDTIL
RVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTISRVTTSKYMLTPFGTFELKY
FFGSHVATDTGGAASSTAIRALIKQLIGAEESKNPLSDSRIAELLGEQGFVVARRTVAKY
REALRIPAVNLRKSL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgacgcttcaactacgcacctcccagcatctggccctgacccctcagttgcag
caatcgatccgtttgctgcaactgtcgacgctcgagctgcagcaggaagtggaacacgcg
ctgacacaaaacccgatgctggagcaggccgacgactggctctcgggctcggttcgcgtc
aacaccgacggttccttgcgcagcgagcgcggcgcatccgccgccgagccaccgcttggc
ggcagccgcgaagcggcatcgcccgagggcggcggcgaccaggacggcagcgattatggc
gaacccctgcgggacaccgccggcgactggacgctcaacgatttcagtcgcaatggcaac
gcccaggacgacgacgacgcgtcacagccgcaactgcatgtcgaccagaccagcctgcgc
gaacatctgctcgcgcaactgaatctgacccaggccagccaacgggaccgtgccctggtg
ggcttcctgatcgaatccctcgatgaagacggctatctgggaattacgctggatgaaatc
cagcatgagctgttgtcggagctcgagctcgaaaccgaggaactgaatgccgcactggcc
ctgctgcaaagcttcgatccggcgggcgtgggcgcgcgcaacgccgcggaatgcctgaaa
ctgcagttgcagcgccagccggccaatgcagtccgggcgctggcgctgcggatcgtgcag
gaccatctcgagttattggcggcccgcgacttcactcgactcaaacgcctgctcggcgcg
agcgacgccgaattgcgcgcggctcatgcagcgatccgcgcgctcgatccattccccggc
tcggcttatggcggccccaccacggactacgtcattccggacgtcctggtgcgcaagtca
ggcaagacctggcacgcggagttgaatccggagatcatgccgaagctgcgcatcaacgaa
atgtatgcgcggattctgcgcagcaatcgcaacgacccgggcgccggcaatctccagcag
caactgcaggaggcgcgctggctgatcaagaatattcagcaacgcttcgataccatcctg
cgcgtcgcgcaagccatcgtcgagcggcaaaagaattttttcacgcacggtgaaatcggc
atgcggcccttggttttgcgggaaattgctgatacgctaggcttacatgaatcgaccatt
tcacgcgtaacgaccagcaagtacatgctcacgccgttcggcacgttcgagctgaaatat
tttttcggcagccatgtggcaaccgacaccggcggggcggcctcctcgaccgccattcgc
gccctcatcaagcaactgataggagcagaagagtccaaaaaccccctttccgacagccgc
atagctgaactgctgggtgagcagggtttcgtggtggcacggcgcaccgttgccaaatac
cgcgaagcgttacggatcccggcagtcaatttgcgcaaatctttgtaa
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