Pandoraea thiooxydans: ABW99_18010
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Entry
ABW99_18010 CDS
T03947
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABW99_18010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptx03021
]
ABW99_18010
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_18010
Enzymes [BR:
ptx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABW99_18010
Transcription machinery [BR:
ptx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABW99_18010
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABW99_18010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AKJ69813
UniProt:
A0A0G3ERU2
LinkDB
All DBs
Position
236918..241129
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVQQDEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVLDPGMTPLKRCQIMTEEDYYNKVEEYGDEFRASM
GAEGVRELLRSIDIDAQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVLGVATTIKAAKKEVENQTPIVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGKGEGLTFADVSEALRAYDNK
EVELTSRVNVRIVEYDVDAETGEKTRKITLYPTTVGRAILSEILPAGLPFSVLNKSLKKK
EISRLINTAFRRCGLRETVIFVDKLMQSGFRLATRAGISICVDDMLVPTKKEEIISEAAR
KVKEYDRQYMSGLVTAQERYNNVVDIWGATGDVVGKAMMEQLSSEEVIDRDGKKVRQESF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALKDRI
LGRVAVVDVVNPETQETVFEAGTLLDEDAVEEIERLGIDEVRVRTPLTCDTRYGLCAKCY
GRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASNVEAKSNGMVR
FTATMRYVTNGKGEQIVISRSGEVMITDDHGRERERHKIPYGATLLQLDGVTVKAGTQLA
TWDPLTRPIITEHGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPTSKNVRPQV
KLLDENGEEVKIPGTDHAVTIGFQVGALITVKDGQQVHIGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLDGNQHEFLIPKDKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDTRFIPGEQVERSEMLDQNDLVNADNKRPAVYDNVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAFHKARKARELSDRER
FDQIAAEEAFEPMPSSLEEPAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctatttaagcaagttcagcaagacgaacagtttgacgcgatc
aagatcggtctggcctcgcctgacaagatccggtcgtggtcgttcggggaagtgaagaag
ccggaaaccatcaattaccggaccttcaagccggaacgcgacggtctgttctgcgccaag
atttttggcccgatcaaagactatgagtgcctgtgcggcaagtacaagcgtttgaagcac
cgtggcgtaatttgcgagaagtgcggcgttgaagtcacgctggcgaaggtgcgccgcgaa
cgcatgggccacatcgagttggcttcgccggtcgcgcacatctggttcttgaaatcgctg
ccgtcgcgcctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgttgtat
ttcgaagcttatgttgtgctcgaccccggtatgacgccgctcaagcgttgccagatcatg
accgaggaagactattacaacaaggtcgaggaatatggcgacgagttccgtgcttcgatg
ggagcggaaggcgtacgcgaactgctgcgttcgattgacatcgatgcccaggtcgaacac
ttgcgcgccgagctgcaagcgactggctccgaagccaagatcaaaaagtatgcaaagcgc
ctgaaggtgctcgaggcattccagcgttccggcatcaagccggaatggatggtgctggag
gtgctgccggtgctgccgccggagttgcgcccgttggtgccgctcgatggtggtcgtttc
gcgacatcggacctgaacgatctgtaccgtcgcgtgatcaaccggaacaaccggttgaag
cggctgctcgagctgaaggcgccggacatcatcgtgcgcaacgagaagcggatgctgcag
gaatcggtcgattcgctgctcgacaacggccgtcgcggtaaagcgatgactggggccaac
aagcgtccgctgaaatcgctcgccgacatgatcaagggcaagagcggccgtttccgccaa
aacttgctgggcaagcgcgttgactattcgggccggtcggtgattaccgtgggcccgacc
ctcaagctgcatcagtgcgggctgcccaagttgatggcgctcgagttgttcaaacccttc
attttccacaagctggaagtgctgggcgtggcgaccaccatcaaggccgccaagaaggaa
gtcgagaatcaaacaccgatcgtctgggacatcctggaagaggtgattcgcgaacatccg
atcatgctcaaccgcgcgccgactctgcaccgcctgggcattcaggcgttcgagccggtg
ttgatcgaaggcaaggccattcagctgcacccgctggtctgcgcggcattcaacgccgac
ttcgacggtgaccagatggctgtgcacgtcccgctgtcgctggaagcacagttggaagcg
cgcaccctgatgctggcttcgaacaacgtgctgttccccgcgaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctggggctgtactacgcgacgcgcgacaaaatcaacggc
aagggcgaagggttgacctttgccgacgtcagcgaggcgctgcgggcatacgacaacaag
gaagtcgaactgacttcccgggtcaatgttcgaatcgtcgagtacgatgtcgatgctgaa
accggtgagaaaacccgcaagatcacgctgtatccgacgactgtcggtcgcgccatcctg
tcggagattctgcctgctggcctgccgttctcggtattgaacaagtcgctgaagaagaag
gaaatctcgcgcctcatcaacacggcgttccgccgttgcggtctccgcgagacggtgatt
ttcgtcgacaagctgatgcaatcgggcttccgcctggctacgcgcgccggcatttccatt
tgcgtggacgacatgctggtgccgaccaagaaggaagagatcatttccgaggcagccagg
aaggtgaaggaatacgaccgtcagtacatgtccggtctggtgacggcgcaagagcgttat
aacaacgtggtcgacatctggggtgcaactggcgacgtggttggcaaggcgatgatggag
caactgtcgtcggaagaggtgattgaccgcgacggcaagaaggtgcgtcaggagtccttc
aactcgatttacatgatggccgactcgggcgcgcgcggttccgcggcgcagattcgtcag
cttgccgggatgcggggcttgatggccaagccggacggttcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgctgcagtacttcatttcgacgcacggcgcg
cgtaagggtttggctgatacggctctgaagaccgcgaactcgggttacctgacccgccgg
ctggttgacgtcacacaggatctggtcgtggtcgaggatgactgcggcacttccaatggc
gtggccatgaaagcgctggtcgaaggtggtgaggtcgtcgaggcgctcaaggaccggatt
ctcggtcgggtcgctgtggtcgacgtcgtcaatccggaaacccaagagaccgtgttcgag
gcgggcacgttgctcgacgaggacgcggtggaagaaatcgagcgcctgggtatcgacgag
gtccgcgtgcgcaccccgttgacttgcgatacgcgctacggcctgtgcgccaaatgctat
ggccgcgatctggggcgtggatcgctggtgaacgtcggcgaggcggtgggtgtgattgcc
gctcagtcgatcggtgaaccgggcacgcagctcaccatgcgtacgttccacatcggcggt
gcagcgtcgcgtgccgctgtcgcatcgaatgtcgaagcgaagtcgaacggtatggtgcgc
ttcacggcaaccatgcggtatgtgactaacggcaagggcgaacagatcgtgatctcgcga
tcgggcgaggtcatgattacggatgaccacggccgcgagcgtgagcgccataagatcccc
tacggtgcaacgttgctgcaactcgacggcgtgacggtgaaggccggcacccagctggcg
acgtgggatccgttgactcgaccgatcatcaccgagcatggcggcacggtgaaattcgaa
aacgtcgaggaaggcgtcaccgttgccaagcaaatcgatgacgtcaccgggttgtcgacc
ctggtcgtgatcgatccgaaacgtcgtggccccaccagcaagaatgtacgcccgcaggtc
aagttgctggacgaaaacggcgaagaggtcaagatccccggcaccgatcacgcggtaacg
atcggcttccaggtgggcgcactgatcaccgtgaaggatggtcaacaagtccacatcggc
gaagtgcttgcccggatcccgaccgagtcgcagaaaacgcgtgacattaccggcggtttg
ccgcgcgtggccgagttgttcgaagcgcgctcaccgaaggatgccggcattctggccgag
gtcacggggacggtctcgttcggcaaggacaccaagggcaagcaacgtctggtcattacc
gaccttgacgggaaccagcacgaattcctgattccgaaggacaagcaggtgttggtgcac
gatggtcaggtggtcaacaagggtgaaatgatcgtggacggccccgccgatccgcatgac
attttgcgcttgcagggcatcgaagcattggcgcgctatatcgtcgatgaagtgcaggac
gtgtatcgcctgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgggttcaaatcgtcgatgcgggcgacacacgattcattcccggcgagcag
gtcgagcgttccgaaatgctcgatcagaacgacctggtcaatgcggataacaagcgtccg
gcggtgtacgacaacgtattgctggggatcacgaaggcatctttgtcgaccgattcgttc
atttccgctgcatcgttccaggaaaccacgcgtgtcctgaccgaggcggcgatcatgggc
aagaaggacgatttgcgcggcctgaaggagaacgtaatcgtcggccgtctgatccctgct
ggtaccggactggcattccacaaggcccgcaaggccagggagttgtccgaccgcgaacgc
ttcgatcaaatcgctgcggaagaggcgttcgaaccgatgccgtcctcgctcgaggagccg
gccgcagagtga
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integrated database retrieval system
