Ectopseudomonas toyotomiensis: JWV26_04635
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Entry
JWV26_04635 CDS
T07285
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pty
Ectopseudomonas toyotomiensis
Pathway
pty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWV26_04635 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pty03019
]
JWV26_04635 (rhlB)
Enzymes [BR:
pty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWV26_04635 (rhlB)
Messenger RNA biogenesis [BR:
pty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWV26_04635 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QSL93660
LinkDB
All DBs
Position
1025534..1026982
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AA seq
482 aa
AA seq
DB search
MLKALKKMFGKAEDEQPQPVPSPVTAPAQSGDAEQKRPRKNKPARTASESAGDSPAQQQP
RPPKADKPRRERPAKPVSTWKLEDFVVEPAEGKTRFHDFKLAPELMHAIHDLGFPYCTPI
QAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRE
LVVQIAKDAAELTKYTGLNVMQFVGGMDFDKQLKQLESRFCDILVATPGRLLDFNQRGEV
HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGDRQTLLFSATFTDDVMNLAKQWTV
NPAIVEIEPENVASDTVEQHVYAVASADKYKLLYNLISQNDWTRVMVFANRKDEVRRIEE
RLTRDGISAVQMSGDIPQHKRIRALEGFREGKIRVMVATDVAGRGIHVDAISHVINFTLP
EDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEALIGRKIQCEMPPDELLKPVPR
KH
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatgttcggcaaagccgaagacgagcagccacaaccagtg
ccgtcacccgtaacagcgcccgcccagagcggtgacgcagagcagaagcgtccccgcaag
aacaagcccgcccgcactgccagcgagagcgcaggcgatagcccggcgcagcaacagccc
cgcccgcccaaggccgacaagccacgccgcgagcgcccagccaagccagtaagcacctgg
aaactggaagatttcgtggtcgagccggccgaaggcaagacccgtttccatgacttcaag
ctcgcccccgagctgatgcatgccattcatgatctgggcttcccctactgcacgccgatc
caggctggcgtactgggctacaccctcaagggccaggacgccattggccgcgcccagacc
ggcaccggcaagaccgctgcgttcctcatctcgatcatcacccagctgctgcagaccccg
ccgccgaaagagcgctacatgggcgagccacgcgcgctgatcatcgcgccgacccgcgaa
ctggtggtgcagatcgccaaggacgctgccgagctgaccaagtacaccggcctcaacgtc
atgcagttcgtcggcggcatggacttcgacaagcagctcaaacaactggaatcgcgcttc
tgcgacatcctcgtggccaccccgggccgcctgctggacttcaaccagcgcggcgaagtg
cacctggacatggtcgaggtgatggtgctggacgaagccgaccgcatgctcgacatgggc
ttcatcccgcaggtgcgccagatcatccgtcagacgccgatgaaaggtgaccgccagacc
ctgctgttctccgccactttcaccgacgacgtgatgaacctggccaagcaatggacggtc
aacccggccatcgtcgagatcgagccggagaacgtcgccagcgataccgtcgagcagcat
gtgtacgccgtagcctcggctgacaagtacaagctgctgtacaacctgatcagccagaac
gactggacgcgggtcatggtcttcgccaatcgcaaggacgaagtacggcgcatcgaagag
cgcctgacccgcgacggcatcagcgccgtgcagatgtccggcgacattccccagcacaag
cgtatccgcgccctggaaggcttccgcgaaggcaaaatccgcgtcatggtcgccaccgac
gtcgctggtcgcggcatccacgtcgatgccatcagccacgtgatcaacttcaccctgccg
gaagacccggacgactacgtgcaccgcatcggccgtaccggccgcgccggcaccagcggc
acctcgatcagcttcgctggcgaagacgatgccttcgccctgccgccgatcgaggcactg
atcggccgcaagatccagtgcgaaatgccgccggacgaactgctcaagccggtaccgcgc
aagcactga
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