Ectopseudomonas toyotomiensis: JWV26_05795
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Entry
JWV26_05795 CDS
T07285
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pty
Ectopseudomonas toyotomiensis
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pty03019
]
JWV26_05795 (hrpB)
Enzymes [BR:
pty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JWV26_05795 (hrpB)
Messenger RNA biogenesis [BR:
pty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JWV26_05795 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
HA2_N
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QSL93872
UniProt:
A0ABD7E0E9
LinkDB
All DBs
Position
complement(1270130..1272664)
Genome browser
AA seq
844 aa
AA seq
DB search
MNTLPIDSLLPDLRNALSARHEVVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL
AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALDGVGL
VIFDEFHERSLDADLALALTLNGRAMFRGEGSGEAPLKVLLMSATLEGERLSALLGDAPV
LRSEGRMFPVDIRWSAPLALGEWIEPRVVQTVQQALADEPGSLLVFLPGQAEIRRVAEQL
GEVLSGHDDILLCPLHGELDLSAQRAAIEPASAGKRKVVLATNIAETSLTIDGVRVVIDA
GLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGVCYRLWSQAQHEQFSAYSSA
EILQADLAGLALQLLRWGVTPQELSWLDVPPPAAYAQALDLLGRLGALDERGALNAHGQA
MTELPSHPRIAHLLLRGQALGLGGLACDLAALLSERDILRGGGADLHSRLALLSGESRAM
RSAQGGVQRARQLAKQFQGLINGRAVSQAVSDPGHSRWLGCLLAFAYPDRIAQQRRAGGA
DYRLANGRAAQFGETDALMKHEWLVVADLGSRQGQREERIYLAADLDPVLFERELAEQVA
TLDVLDWDEREGVLRAERQRKVGELVLERQALAALDEAARGRALVGLVRRKGLELLPWTP
ELRQWQARVALLRELDLQQQGQSEWPDLSDATLLASLEQWLTPFLGKVNRLSHFANLDLP
LILQTLLPWPLPQRLDELAPRALSVPSGSRIAIDYTEHPPVLAVRLQELFGLAATPRIAG
GRLGLKLHLLSPARRPVQVTQDLASFWANTYLEVKKDLKGRYPKHYWPDDPLIAEPTARA
KPRK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaataccctgccgatcgattcgctgctgcctgatttgcgcaatgcgctgagcgcccgc
cacgaagtagtgctggaggcgccgcccggtgccggcaagaccacccgcgtaccgctggca
ttgctcgatgcgccctggctggctgggcaaaccatcctcatgctcgagccgcgtcgcctg
gcagcacgtgctgccgccgagcgcctggccagcgagctgggcgaacgggtcggcgagacg
gtcggctaccgcattcggctggacagcaaggtggggccgaacacgcgcatcgaggtggtc
accgaaggcattcttgcccgccgcctgcaggacgatccggcgctggatggcgtcggtctg
gtgatcttcgacgaatttcacgaacgcagcctcgatgccgacctggccctggcgctgacg
ctcaacggccgcgccatgttccgtggcgaaggcagcggcgaggcgccgctcaaggtgctg
ttgatgtccgccactctcgaaggcgagcgtctgtcggcattgcttggcgatgcgccggtg
ctgcgcagcgaagggcgcatgttcccggtggatatccgctggagcgcgccgctggcgctc
ggtgagtggatcgagccgcgggtagtgcagacggtacagcaggcgctggccgacgagccg
ggcagcctgctggtgttcctgccggggcaggccgagattcgccgcgtggccgagcaactg
ggcgaggtgctgagcgggcacgacgacatcctgctctgtccgctgcatggcgagctggat
ctgtccgcccagcgtgctgccatcgagccggcctcggccggcaagcgcaaggtggtgttg
gccaccaacatcgccgagaccagcctgaccatcgacggcgtgcgtgtggtcatcgatgcc
ggcctggcgcgggtgccgcgcttcgacccggccagcggcatgacccgcctcgacacccag
cgcatttcccgtgcctccgcgacccagcgcgccggccgtgccgggcgcctgcagccgggc
gtgtgctatcggctgtggtcgcaggcgcagcacgaacagttcagcgcctattccagtgcg
gagatcctccaggcggacctggccggactagccctgcaactgctgcgctggggcgtgaca
ccgcaggagctgagctggctcgacgtgccaccgccggccgcctacgcccaggcgctggat
ctgcttggtcgcctgggcgccctcgatgaacgtggtgcactcaatgcccacggtcaggcc
atgaccgagctgccgagccatccacgtattgcccatctgctgctgcgtggccaggcgctg
gggcttggtgggctggcctgcgatctggcggcgctgttgtccgagcgcgatatcctgcgc
ggaggtggcgccgacttgcacagtcgtctggccctgctcagcggcgaaagccgcgccatg
cgctcggcccaagggggcgtgcagcgggcgcggcaactggcgaagcagttccaggggctg
atcaatggccgggccgtcagccaggcagtgagtgaccctggacactcgcgctggctcggc
tgcctgctggccttcgcttaccccgaccgtattgcccagcaacgccgagccggcggcgct
gactatcgcctggccaatggtcgcgcggcacagttcggtgaaaccgatgccctgatgaag
cacgaatggctggtggtggccgatctgggcagccgccagggccagcgcgaggagcgcatc
tatctcgccgccgatctcgacccggtgctgttcgagcgtgaactcgccgagcaggtcgcg
acgctggacgtgctcgactgggacgagcgtgaaggcgtgctgcgcgccgaacgtcagcgc
aaagtgggtgagctggtgctggaacgccaggcgctggccgcgctggacgaggcggcgcgc
ggccgcgccctggtcggcctggtacggcgcaagggcctggaactgctgccgtggacgccg
gagctgcgccagtggcaggcacgcgtggcgctgctgcgcgagctggatttgcagcaacag
ggacagagcgaatggccggatctgtccgatgctacgctgctggccagcctcgagcagtgg
ctgacgcccttcctgggcaaggtcaaccgcctcagccatttcgccaatctcgacctgccc
ttgatcctgcagacgctcctgccctggccgctgccgcaacgccttgacgagctggcgccg
agagcgctgagcgtgccgtccggctcgcgcatcgccatcgactacacggagcacccgccg
gtgctcgccgtgcgcctgcaggagttgttcggcctggccgcgacgccgcgcatcgccggt
ggtcgtctgggcctcaagttgcatttgctgtcgccggcacgtcgtccggtgcaggtgact
caggacttggccagcttctgggccaacacctatctggaggtgaagaaggacctcaagggc
cgctatcccaagcattactggcctgacgacccgctgatcgccgaacccacggcgcgagcc
aaaccgagaaaatga
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