Ectopseudomonas toyotomiensis: JWV26_06855
Help
Entry
JWV26_06855 CDS
T07285
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pty
Ectopseudomonas toyotomiensis
Pathway
pty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWV26_06855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pty03021
]
JWV26_06855 (rpoC)
03400 DNA repair and recombination proteins [BR:
pty03400
]
JWV26_06855 (rpoC)
Enzymes [BR:
pty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWV26_06855 (rpoC)
Transcription machinery [BR:
pty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWV26_06855 (rpoC)
DNA repair and recombination proteins [BR:
pty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWV26_06855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QSL94074
LinkDB
All DBs
Position
complement(1478612..1482811)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKEKDGSITKNTRIVDTTVGRALLFQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccagagcgcgacggcctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtggcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgtgctctat
ttcgagagctacgtcgtaatcgatccgggcatgaccaccctcgagaagggtcagctgctg
aacgacgaacagtacttcgaagccctcgaagagttcggtgacgacttcgatgcgcgcatg
ggcgccgaagccgtgcgtgagctgctgcacgccatcgacctggatcatgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaacctgccggaatggatggtgctgacc
gttctgccggttctgccgccggatctgcgtccgctggtaccgctggatggtggccgcttc
gcgacttccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctcaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgttattaccgtcggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgcgaagaagatg
gtcgagcgcgagctgccggaagtgtgggacgttctcgccgaagtgatccgcgaacacccc
gtcctgctcaaccgtgcaccgaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctctcgcccgccaacggtgagccgatcatc
gtgccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccgtgaacgcc
aagggagaaggtcgcgtattcgccgacctgcaggaagtcgatcgcgtgttccgcgccggc
gaagcgtccctgcacgcccgcgtgaaagtgcgtatcaacgaaaccatcaaagagaaagat
ggttcgatcaccaagaacacccgcatcgtcgacaccaccgtcggccgcgcgctgctgttc
cagatcgtaccggccggcctgtcttacgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgttggtctgaaggacaccgtcatcttc
gctgaccagctgatgtataccggtttcgcttactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcgcatcatcgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggccaacgatgaagtgtccaaggcgatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggcaagaccgtcgagcaggagtccttcaac
tccatgtacatgatggcggactccggtgctcgtggtagcgccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgcgaaggtctgtcggttctgcagtacttcatctccacccacggtgctcgt
aagggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtgaccgagatcgattgcggtaccgagcacggtctg
ctgatgacgccgcacatcgaaggcggcgacgtcgtcgagccgctgggtgagcgcgtactg
ggtcgagtgattgccaaggacgtgttcaagccaggcaccgaggacgttatcgtcccggcc
ggtaccctgatcgacgagcagtgggtcgagttcatcgagctgaacagcgtcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgcttcggcatctgcgccaagtgctacggc
cgcgatctggcccgtggtcaccaggtcaacatcggtgaggcggtcggcgttatcgcagcg
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggcgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgcctg
cacaacctgaagcacgtcgagcgcgtggacggcaacctggtagcggtttcccgctccggc
gagctggctgtggctgacgagttcggtcgcgagcgcgagcgttacaagctgccgtacggt
gccgtgatttccgtgaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtaccgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gttctcgatccgaaggatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgatgccaacggcaaggaactgctgctgccgggtaccgacgttcccgctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcgcagatcgcggtcggtgacgtt
atcgcccgtattccgcaagagacctcgaagactcgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaggaagcttcgatcctggcggaaatcagc
ggcaccatctcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagtgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgatatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgaagtcagcgagtccggcgattcgtccttcatcaagggcgaccagatg
gagctcacccaggttctgggcgagaacgagcgtctggccgaagaggacaagttcgtcgcc
aagtacacccgcgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tcggcagcgtccttccaggaaaccactcgcgtcctcaccgaggcggcggttaccggcaag
cgcgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgcagacaagccggtacga
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggaaattga
DBGET
integrated database retrieval system
