Ectopseudomonas toyotomiensis: JWV26_23775
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Entry
JWV26_23775 CDS
T07285
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pty
Ectopseudomonas toyotomiensis
Pathway
pty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JWV26_23775 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pty03400
]
JWV26_23775 (recD)
Enzymes [BR:
pty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JWV26_23775 (recD)
DNA repair and recombination proteins [BR:
pty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JWV26_23775 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
TraI_hel_assoc_N
SLFN-g3_helicase
nSTAND3
DEAD
AAA_17
AAA_28
Mg_chelatase
PhoH
NTPase_1
ATPase
AAA_29
AAA_7
AAA_5
AAA_25
T2SSE
TrwB_AAD_bind
NACHT
AAA_18
GvpD_P-loop
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QSL92713
UniProt:
A0ABD7DW25
LinkDB
All DBs
Position
complement(5119252..5121282)
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AA seq
676 aa
AA seq
DB search
MSAMLAPALRDRAELFALLSTWSERGWLRELDRALAQLFAELDADASPLLLLGAALASHQ
LGQGHVCLDMAATLVNPDFTLSLPPEGEDAQEAMILPSQVLDGLSLESWLAACAGSSLLE
SEGAPLVLSGACLYMRRYWNYERQVAGDIARRLQASAAAPSDLAVRLASLFPDALVVDGQ
RLTDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMATGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDAANPLPLDVL
VVDEASMIDLEMMASLLNALPAHARLILLGDKDQLASVEAGAVLGDLCQEAESGGYSEAT
RARLENQTGERLEDPALVAGDKALAQHIVMLRHSRRFGSGSGIGRLARAVNLGDAQSARA
TLTTGAHDLHVLRLSGEQDRALERLLIEGQGGGEPRPQGYAHYLQMMQAERPAPDADSQA
WDRWAGRVLAAFDQFQLLCAVRKGTWGVETLNERIAEALVKRGLLEQSHGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPLEFPGAPLREVLRVVFPRNDGSGALRHILPSRLSAVDT
VFAMTVHKSQGSEFAHCALILPDSLNPVLTKELIYTGITRARHWFSLVESRAGIFEQAVQ
RRVVRRSGLREALEKQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgatgcttgcgccggcgctgcgtgatcgcgccgaactctttgccctgctttct
acctggagcgagcgtggctggctgcgcgagctggatcgcgcgctggcgcaattgttcgcc
gaactggacgcggacgcttcgcccttgctcctgctcggcgccgcactggccagtcatcag
ttggggcaggggcatgtgtgcctggacatggcggccacgctggtcaatccggatttcacc
ctgtctctgccaccggaaggcgaggatgcgcaagaagcgatgatcctgccgtcgcaggtg
ctggatgggcttagcctggagtcctggctggcagcctgtgcgggcagttcactgctggag
tccgagggggcgccgttggtgctcagcggcgcctgtctatatatgaggcgctactggaac
tacgagcgccaggtggctggcgatatcgcgcggcgtctgcaggcgagcgccgcggcgccg
agtgatctggctgtgcgcctggcttcactctttcctgatgcgctggtggtggacggccag
cgcctcaccgactggcagaaactggcttgtgccatggcggcgcaagggcgcttcaccctg
attaccggtgggccgggaaccggtaagacaaccacagtggtgcgcttgctggcgcttttg
caggaggcggccatggccactggcgagccgctgcgcctgagtctggcggcgcctaccggc
aaagcggccgcgcggctgaccgaatccattggcgcgcaggtgcagtccctggcgctggac
gagcgagtgcgtgagcagattccaaccctggtgacgacgctgcatcgtctgttgggcagt
cgtcccggcagccgtcatttccgtcacgatgccgccaatcccttgccactggacgtgctg
gtggtcgatgaggcgtcgatgatcgacctggagatgatggccagcctgctgaatgccttg
ccggcgcatgcgcgcctgattctgctgggcgacaaggaccagctcgcgtcggtggaggcc
ggtgcggtgctgggcgatctctgccaagaggcggagagcggtggctacagcgaggcgaca
cgtgccaggctggaaaaccagacgggcgaacggctggaagatccggcgttggtggccggt
gacaaggctctggcgcagcatatcgtcatgctgcgtcactcgcgtcgtttcggcagtggc
tcgggtatcgggcgtctggcgcgtgcggtgaacctgggcgatgcgcagtcggcccgcgcg
actctgacaaccggtgcacatgatttgcacgtgttgcgtttgtcaggtgagcaggatcgt
gcgctggagcgactattaatagaggggcagggcggtggcgagccccgtccgcagggatat
gcacattatctacagatgatgcaggcggagcgtcctgctccagatgccgactcccaggcc
tgggatcgttgggctggtcgcgtcctggcggcgttcgatcagttccagttgctctgtgcg
gtgcgtaaaggtacatggggcgtggaaacgctcaacgaacgtattgccgaagcgttggta
aagcggggcctgcttgagcagtcgcatggctggtatgaaggtcggcccgtgctggtaacg
cgcaatgactacagcctggggctgatgaacggcgatatcggcatcgcgctgcgtctgccc
gagccgcttgagtttccaggtgcgcctttacgtgaggtgctgcgcgttgtattcccgcgt
aatgacggcagtggcgccttgcggcacatcctgcccagtcgcctgagcgcggtggacacc
gtgttcgccatgaccgtgcacaagtcgcaggggtcggagttcgcccattgcgcgctgatc
ctgcccgacagcctcaatccggtcttgaccaaggagctgatctataccggcatcacacgg
gctcgtcactggttcagcttggtcgagagccgtgcgggcatcttcgagcaggctgtgcag
cggcgcgtggtgagacgcagcggcctgcgcgaagcgctggaaaagcaataa
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