Ectopseudomonas toyotomiensis: JWV26_23780
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Entry
JWV26_23780 CDS
T07285
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pty
Ectopseudomonas toyotomiensis
Pathway
pty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JWV26_23780 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pty03400
]
JWV26_23780 (recB)
Enzymes [BR:
pty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JWV26_23780 (recB)
DNA repair and recombination proteins [BR:
pty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JWV26_23780 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
PaaX_C
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QSL92714
LinkDB
All DBs
Position
complement(5121279..5124908)
Genome browser
AA seq
1209 aa
AA seq
DB search
MSQKRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGDDAAFREPLLPPQILVV
TFTDAATRELRDRIRARLVEAATVFRGDAQGDDLLRELRGDFAQTQWDECARRLELAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHGYPLQGAAL
QWVASVWGTPDGLGARLRPLLGEEGEGTTQSLGELLDNALQQREQALAELKSPWLAWADE
LQLLLDAAVAAKQVDGKKIQARFYNPWLARLREWAGSEEPHLDLGTGFTRLTPDGLAESW
KGEAPAHPALKAMALLKAQLDALPDPADAALRHAAAWVRQRFDWEKRQRAEMGFDDMLVR
LDAALQGSNGPRLAEVIRRQFPVAMIDEFQDTDPLQYRIFDTLYEVELNRDDCGLFMIGD
PKQAIYSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRDGGEGA
FLLRDDLPFIEVGAQGRGEVWSVEGQAQPALMLWHLESDEPVAKGAYLDAMAVGAASEIV
RLLDLGQRGQAGFIKDEVLNTLRPSDIAVLVRDFNEAQAIRGELAARGVRSVYLSDKDSV
FAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDERTWERRVMQFRD
YRQRWQHQGVLPMLRQLLQDFDLPQRLMGRDDGERVLTNLLHLAELLQQAAAELDGELAL
IRHLGELLAGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFICAFRPVDDKK
PLQIHDGERRRLVLKADGDSLERAERERLGEDLRLLYVALTRARHACWLGVADLKIGNGK
KSRLHESALGYLLGGGEPLMASAGLADWLAPFVDGLESTVTPLPTASEQRYRMLEERQFE
PSWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDTAPDSPAMQNAIDDEDPLQALPP
LPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPPRLREALARRCQRRGLESWI
DPLQHWLLALLSQPLTLGGADTVVLAQLTQYQPELEFWFEARGVDVRLLDQWVQQCELPG
LARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGADDNAYTREAMEAAIASHRY
DLQYVLYVLALHRQLRLRLPDYDYDRHLGGALYLFLRAPQQGAYLARPPRELIERLDVLF
MGEAEEGAA
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaagcgccctctggccctgacgtttcccctgcatggcagccgtctgatcgaa
gccagcgccggcacgggcaagaccttcaccatctccgcgctctacctgcgactgatcctc
ggccacggcgacgacgccgcattccgcgagcctctgttgccgccgcagattctggtggtg
accttcaccgatgcggccacccgcgagttgcgcgatcggattcgcgcgcgcctggtcgag
gccgcaaccgtattccggggcgatgcccagggagatgacctgctgcgcgagttgcgcggt
gatttcgcgcaaacgcagtgggacgagtgcgcccgccgcctggaactggcggcgcagtgg
atggacgaggctgcggtgtccaccatccacggctggtgccagcgcatgctgcgcgagcat
gccttcgacagcggcagcctgttcagccagaccctggagaccgaccacagcgagctgctg
gccgaagtggtgcgcgattactggcggcagcacggctatccgctacagggcgctgcgttg
caatgggtcgcaagtgtgtgggggactcctgatggtctcggcgccaggctacgtcctctg
ctgggcgaggagggtgaagggacgacgcagtcgctgggcgagctgctcgataacgcgctg
cagcagcgtgagcaggcgctggcagaactcaagtcgccctggctggcctgggccgatgaa
ctgcagctgctgctggatgcggcggtggcggccaagcaggtggacggcaagaaaatccag
gcgcgcttctacaatccctggctggccaggttgcgcgagtgggccggtagcgaagaaccg
cacctcgacctgggcaccggtttcacccgcctgacccccgatggcctggccgaatcctgg
aagggcgaagcgcctgctcatccggcattgaaggccatggctctgctcaaggcgcaactc
gatgcgctgcctgatcctgctgatgcggctttgcgtcacgcggcggcctgggttcgccag
cgcttcgactgggagaaacgccagcgcgcggagatgggcttcgacgacatgcttgtgcgc
ctggacgctgccctgcaaggcagcaacggcccgcgcctggccgaagtgatccgccgccag
tttccggtggcgatgatcgacgagttccaggacaccgacccgctgcagtaccgcatcttc
gatacgctctacgaagtcgagcttaatcgcgacgactgtggcctgttcatgatcggcgat
cccaagcaggccatctattccttccgcggcgctgacattcatacctacctgcgcgcgcgc
cgggcgacgttgggtcggcactacaatctggagaagaacttccgctccagccaggccatg
gtcgatgccgtcaacggcgtgttcctacgggccgagcagcgtgacggtggcgagggggcg
tttctgctgcgcgatgacctgccttttatcgaggtgggcgcgcagggtcgaggcgaagtc
tggagtgtcgaggggcaggcgcaacccgccctgatgctgtggcatctggagagtgacgag
ccagttgccaagggtgcctatctggatgccatggcggtcggtgcggccagcgagatcgtg
cgtctgctggatcttggccagcgcggacaggcaggtttcatcaaggacgaggtactgaat
actctgcgccccagcgatatcgccgtgttggtgcgtgatttcaacgaggcgcaggccatt
cgcggcgagctggctgcgcgcggcgtgcgcagcgtctatctctccgacaaggattcggtg
ttcgccgcccaggaggcacgcgatctgttgctgtggctgcgtgcctgcgccgagccggat
caggatcgcccgctgcgtgcggcgctggccagcgcgacgctggggctggcgctgagcgaa
ctggagcaactcaacctcgacgagcgcacctgggaacgccgggtcatgcagtttcgcgac
taccgccagcgctggcagcaccagggtgtgctgccgatgctgcgccagttgctgcaggac
ttcgacctgccgcagcggttgatgggacgtgacgatggcgagcgggtattgaccaacctg
ttgcatctggccgagctgctgcaacaggccgccgctgaactcgacggcgaactggcgctg
attcgtcacctcggcgagctactggccggtgagggacaggctgccgatgagcaggtgctg
cgcctggagagcgacgaggcgctggtgcgcgtggtgaccatccataaatccaaggggctg
gagtaccccctggtgttcctgccgtttatctgcgccttccgtccggtggatgacaagaaa
ccgctgcagattcatgacggcgagcgccgccgcctggtgctcaaggccgatggcgacagc
ctggagcgcgccgagcgcgagcgtctgggtgaagacctgcgtctgctctacgtggcgttg
acccgtgcccggcatgcctgctggttgggcgtggcggatctgaagatcggcaatggcaag
aagtcgcgcctgcatgagtcggccctgggctatctgctaggtggcggcgagcctctgatg
gctagtgccgggcttgctgattggctcgcgccatttgtcgacgggctcgaaagcaccgtg
acgccgctgccgacggccagcgagcagcgctaccgcatgcttgaggagcggcagttcgag
ccgagctggcgcacgccggcgcggcgcgctgccgagcactggtggatcgcctcttacagt
gcactgcgtctggacgaggacgcacccagtcaggtcagtcgtcatgaagacaccgcgccc
gacagtccggcgatgcagaatgccatcgacgatgaggatccgctgcaggccctgccgccg
ctgccggcatccgctcaagggctgcatcgcttcccgcgtgggccgaatcccggcaccttc
cttcatggtctgctggaaatggcggcgcaggaaggctttgcgaccctggcgcaggatccg
ccgaggctgcgcgaggcgttggccaggcgctgtcagcggcgcggtctggaaagctggatc
gatccgctgcagcactggctgctggcgctgctgagccagccgctcacgttgggtggggcg
gataccgtcgtgctggcacaactgacgcagtatcagcccgagctggagttctggttcgag
gcccgtggggtggacgtcaggctattggatcagtgggtgcagcagtgcgaattgccgggc
ctcgccaggcagccgctgcgtgccgataccctcaacggcatgttcaagggctttatcgat
ctggtattcgagcatcaggggcgctactacgtggccgactacaaatccaactggcttggc
gccgacgacaacgcctacacccgtgaagcgatggaagcggccatcgccagccatcgttat
gacctgcaatacgtgctttacgtactggcgctgcatcgtcagctgcgtctgcgcttacca
gattacgactacgaccggcatttgggcggcgcgctgtacctgttcctgcgtgcgccgcag
caaggcgcctacctggcgcgaccgccgcgcgagttgatcgaacgcctggatgtgctgttc
atgggcgaagcagaggagggcgcagcatga
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