Pseudomonas tensinigenes: HU718_002400
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Entry
HU718_002400 CDS
T07620
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU718_002400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptz03019
]
HU718_002400
03400 DNA repair and recombination proteins [BR:
ptz03400
]
HU718_002400
Enzymes [BR:
ptz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU718_002400
Messenger RNA biogenesis [BR:
ptz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU718_002400
DNA repair and recombination proteins [BR:
ptz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HU718_002400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QXI06564
LinkDB
All DBs
Position
547895..549823
Genome browser
AA seq
642 aa
AA seq
DB search
MHNTLEQVFGFPQFRPGQETAISAVLAGRSAAAIFPTGSGKSICYQLPALMLPHLTLVVS
PLLALMQDQLAFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQTLLLTATATPKVIADM
QAKFAIAADDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSDRPGQPSIVYVTLQKTAE
HIAEHLERNGIQAEAYHAGLAHDKREAIQKRFMAGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIRYVLDELK
ASVPEGQWEFLLGPLADQSNIRSLPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPEAL
LERFDGERREFVAAIIQTSARARTWATVNFEAMYSQYSAERNRVVKALDYFQEKGWVELE
SKQMTEVYSLLNSDFDSDALSVELHEYFTRHEQAEVARIHTMLEVFATERCLGYRLAEYF
GDHNAPQQCGHCSVCHGQVARLPAPPELPALVDKNFAALCGDFVHRHEQHTGVIPTAERV
TRFLCGISVPLFTKLKARAIPGFAELEEYPYGEVRSWAQEHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggtttttggttttccacagtttcgacccggacaagagacg
gcgatcagcgcggtgctggccgggcgttcggcggcggcgatttttcccaccggttccggc
aagtcgatttgttatcaattgccggcgctgatgctgccgcacctgacgttggtggtctcg
ccgttactggcgctgatgcaggatcaactggccttcttgcagcgtcatggcatatccgca
ggcagcatcgattctgcgcagagtcgcgatgatgccaatgacgtgatggcccgcgcccgt
tcgggtgaattgaagattttgatgatctcggtggagcgtttgaagaacgagcgctttcgc
aactttttgcagcaggtgccgatctcgttgctggtggtggacgaggcgcattgcatctcg
gaatggggccataactttcgccccgactacctcaagctgccggactaccagcgccagttc
aacatcccgcaaaccttgttgctgacggccacggcaacgccgaaagtcatcgctgacatg
caggccaaattcgcgattgctgccgacgatgtggtgaccaccggcttctatcggcccaac
ctcaacctgttggtcgaaccggtgcgcggccaggacaagcggcggcgtctggtggagtgg
atgagcgatcgtccggggcagccgagcatcgtctacgtgaccttgcagaaaaccgctgag
cacatcgccgaacaccttgaacgcaacggcattcaggccgaggcgtatcacgccggttta
gcccatgacaaacgcgaggcgatccagaagcgctttatggctgggcagtccaattgcatc
gttgcgacgatcgctttcggtatgggcatcgacaagagcgacatccgcaatgtggtgcac
ttcgacttgcccaaatccatcgaaaactatagtcaggaaattggccgcgccgggcgcgac
gggcagccgtcggactgtctggtattggccaatcgcgacagcctcaacgtgctggaaaac
ttcgtctacggcgatacgccggagcgtgatggcatccgctatgtgctcgacgaactgaag
gcctcggtgccggaaggacagtgggagtttctgctcgggccattggcggatcagagcaat
attcgctcactgccgctgaaaacattgctggtgcaactggagctgcgcgggttgatcgcg
ccgcgctatgcctactacgccgaataccgtttcaaatacctgctggaaccggaagcgctg
cttgagcgtttcgacggtgagcgcagggagttcgtcgccgcaatcattcagacttcggcg
cgcgcgcgcacctgggccacggtgaatttcgaggcgatgtattcgcaatattccgccgaa
cgcaatcgggtggtgaaggcgctggattactttcaggaaaagggctgggtcgagctggaa
agcaagcagatgaccgaggtctacagcctgctgaatagtgactttgacagcgatgccctg
agcgtcgagctgcatgaatatttcacccggcatgagcaggcggaagtggcgcgcatccac
acgatgcttgaagtgttcgccaccgaacgctgcctggggtatcgcctggcggagtatttc
ggtgatcacaatgcacctcagcagtgtgggcattgttcggtgtgtcatggccaggtggcg
cgattgccggcgccgccggaattgccagcgcttgtggataaaaactttgcggcgttgtgt
ggcgattttgtccacaggcatgagcagcacaccggggtcatcccgacagcagagcgggtg
acgcggtttctgtgcgggatcagtgtgccgctgtttaccaagctcaaggcgcgagcgatt
cccgggtttgcggaattggaagagtatccctacggcgaagtccgcagctgggcccaagag
cacctttga
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