Pseudomonas tensinigenes: HU718_003705
Help
Entry
HU718_003705 CDS
T07620
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU718_003705 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptz03019
]
HU718_003705 (rnr)
03016 Transfer RNA biogenesis [BR:
ptz03016
]
HU718_003705 (rnr)
Enzymes [BR:
ptz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HU718_003705 (rnr)
Messenger RNA biogenesis [BR:
ptz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU718_003705 (rnr)
Transfer RNA biogenesis [BR:
ptz03016
]
Prokaryotic type
tRNA degradation factors
HU718_003705 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXI06811
LinkDB
All DBs
Position
850392..853022
Genome browser
AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKITEARQLRGEYNDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGTERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPAAKEKAEAAPAK
TAGRRPAKEKVAEAYRPSDAVAKNAELRKSREMKKALLSDAKNGGKAASGGKTGRSAPEK
ASGSKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttctccggctgcc
cgcgagcaactggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgccttcgcgccatggagcgcgacgctcaactgatctacacccgtcgcggtacgtac
gcgccggtcgacaagctcgacctgatccttggccgcatcagcggtcaccgtgacgggttt
ggcttcctggtgccggacgacggcagcgacgacctgttcatgagccccgcgcaaatgcgt
ctggtattcgacggcgaccgtgcgctggcccgtgtttccggcctcgaccgtcgcggtcgc
cgcgaaggcgtgatcgtcgaagtggtttcgcgagctcacgaaaccatcgtcggtcgctac
ttcgaagagggcggcatcggttttgtcgttgccgacaacccgaagattcagcaagaagtg
ctggtcaccccgggccgcaacgccaatgcgcagatcggtcagttcgtcgaggtgaaaatc
acccactggccgacgccgcgcttccagccgcaaggcgatgtggtcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgacgttgccctgcgcacctacgatattccgcacgtc
tggcctgaggctgttctgaaagaagcggccaagctcaagccggaagtcgaagaaaaagac
aaagagaagcgcatcgacctgcgtcatctgccgttcgtcactatcgatggcgaagatgcc
cgcgacttcgacgatgccgtttattgcgaagccaaaccgggcaagctgcgcctgttctcc
ggcggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagatcggctcg
gcgctggacaacgaagcgcaagtgcgcggcaactcggtgtacttccccgagcgcgtcgtg
ccgatgctgcctgagcaactgtccaacggcctgtgctcgctgaacccacacgtcgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaagcggtgatccattcccacgcccgtctgacgtacaacaaagtcagcgcgatgctg
gaaacgccgaaaatcaccgaggcgcgtcagcttcgcggtgagtacaacgatgttctgccg
cacctcaagcagctttatgcgctgtacaaggttctgctggctgcccgtcacgtccgtggc
gcgatcgatttcgaaacgcaggaaacccgaatcatcttcggtaccgagcgcaagattgcc
gaaatccgtccgaccacccgtaacgacgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtagccactgccgaattcctcaagaagcacgaaattcctgcgctgtaccgcgtc
cacgacggcccgccaccggagcgtctggaaaaactgcgtgcgttcctcggtgagctcggc
ctgtccctgcacaaaggcaaggacggcccgtcgccgaaggactatcaggccttgctggcg
agcatcaaggaccgtccggatttccatctgatccagaccgtgatgctgcgctcgctgagc
caagcggtgtacagcgctgacaaccagggtcacttcggcctgaattacgaagcctatacc
cacttcacttcgccgatccgtcgttacccggacctgctcacgcaccgcgcaatccgcagc
gtgatccattcgaaacaggacaccccgcacgttcgtcgtgccggcgcgatgaccattccg
aaggcgcgtatctatccgtacgacgaagcagcgctggagcagctcggcgagcagtgctcg
atgagcgagcgccgtgctgacgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgagtcgttcccgggcgtgatcactgcggtgaccggtttt
ggtctgttcgtcgaactgaccgatatctacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggcgattactaccacttcgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgtagcttccgcctcggcgataccgttgaagtgcgcgtgatgcgcgttgacctcgacgag
cgcaagatcgacttcgagatggctgaaaaaaccatcagcgcgccgatcggtcggaaaaag
cgtggtgctgaaactgccgcacccgccgcgaaggaaaaagccgaagcggctccagcgaaa
accgctggtcgtcgtccggcgaaagaaaaggtcgccgaagcctatcgtccaagcgacgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgaaatgaagaaagcgctgctttccgac
gctaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgaaaag
gcctccggcagcaagccagcaaaaccgagcaaacaccgtaaaggcccgccaaaagcgggt
tctgctccagccaaaagtggcggggcacgtaaaccgaaggcgaagtcatga
DBGET
integrated database retrieval system
