Pseudomonas tensinigenes: HU718_026655
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Entry
HU718_026655 CDS
T07620
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ptz
Pseudomonas tensinigenes
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptz03019
]
HU718_026655 (hrpB)
Enzymes [BR:
ptz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU718_026655 (hrpB)
Messenger RNA biogenesis [BR:
ptz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU718_026655 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_22
HA2_N
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QXI05553
LinkDB
All DBs
Position
complement(6003062..6005578)
Genome browser
AA seq
838 aa
AA seq
DB search
MNSLPIDEVLPALREALATRHEAVLEAPPGAGKTTRVPLALLNEAWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFRAEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMYPVTMRWGRPFQPGEYIDQRVTQTVLEALHDETGSLLVFLPGQAEIRRVHQQLADAI
GERGDVLLCPLHGELDLNAQRAAIDPAPAGQRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISKASATQRAGRAGRLEPGVCYRLWSQDQHEQLAAYGSAEILS
ADLASLALQLGRWGVTPGELVWLDVPPAAAYAQAQDLLQRLGALEGESLTTHGQAMAELP
AHPRIGHLLLRGQALGLANMACDVAALLGERDILRGAGADLHSRLVLLSGEERAARGAQG
GVQRAKQLARQYRGYLRGKASEPVSDPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLAN
GRAALFAEADSLMKEPWIVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVRNVDQLD
WDEREGVLRAERQRKVGELILSREPLTGLDENARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRQLELNHQDDSQWPDVSDAALLNTLEDWLMPYLGKVSRLSHFASLDLSSIVRNL
LPWPLPQKLDELAPHHLSVPSGSSIRLDYSEFPPVLAVRLQELFGLADTPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttgccaatcgatgaagttttacccgccctgcgtgaagccctagcgacgcgc
cacgaagccgtgctcgaagcaccgcccggcgccggtaaaaccacccgcgtgcctttagcc
ttgctcaatgaagcgtggctggccgggcagaccattctgatgcttgaaccgcgccgtctc
gccgcgcgggcagcggcggaacggctggccagtgagctgggcgagaaggtcggtgaaacc
gttggttaccgcattcgtctcgacagcaaggtcggccccaacacacgcatcgaagtggtc
accgagggcattctcactcgtcgcttgcaggatgacccggcgctggaaggcgtgggcttg
ctgatcttcgacgaatttcacgaacgcagcctcgacgcggatctggcgctggccttaagt
ctgaacggtcgcgagttgttccgagctgaacagccgctgaagattttgttgatgtcggcc
acgctggaaggcgagcgtctggccgggttgctcgatgatgcgccgatcctgcgcagcgaa
ggccgcatgtatccggtgacgatgcgctggggccggccgtttcagcccggtgaatacatc
gaccaacgtgtcacgcaaaccgtgctcgaagcgctgcacgatgaaaccggcagcctgttg
gtgtttctgccggggcaggcggaaatccgtcgtgtgcatcaacaattggccgacgccatt
ggtgagcgcggcgatgtgttgctgtgcccgttgcacggtgaactcgacctcaacgcacaa
cgtgcggcgattgatccggccccggccggtcagcgcaaagtggtgctggcgaccaacatc
gccgagaccagtctgaccatcaacggcgtgcgcgtagtcattgatgccgggctggcgcgg
gtgccgcgtttcgatcccggcagcggcatgacgcgcctcgatactcagcggatttccaag
gccagcgccacccagcgtgcgggccgggcagggcgactcgagccgggcgtttgctatcgc
ttgtggtcgcaggatcagcacgaacaactggcggcgtatggcagtgcggaaattctttcg
gcggatctcgccagcctcgccctgcaactggggcgctggggtgtcacgccgggcgaactg
gtctggctggatgttccaccggcggcggcttatgcacaggcgcaggatctgttgcagcga
cttggcgcgctggaaggcgagtctctgaccacgcacggtcaggccatggctgaattgccg
gcgcatccgcgcatcggccatttgctgctgcgggggcaggcgttgggtctggcgaacatg
gcgtgcgatgtcgccgcgttgctcggcgagcgcgatatcttgcgtggcgccggggcggat
ctgcatagtcgcttggtgctgctgtccggcgaggaacgtgccgcccgtggtgcgcagggc
ggggtacagcgcgctaagcaattggcgcggcaatatcgcggttatctgcgcggcaaggcc
agcgagccggtcagcgatcctgatcatccgcgctggctcggtgccttgctggcgctggcc
tatccggatcgcgtcgcgcaacagcggcgtgccggtggcgccgaatatcgtctggccaac
ggtcgtgcggccttgttcgccgaggccgacagcctgatgaaggagccgtggatcgtcatc
gctgatctcggcagccgtcaaggccagcgcgaagaacggatttatctggcggcggatttc
gatccggcgctgttcgattcggtgctggccgaacaggtgcgcaacgtcgatcaactggat
tgggatgagcgcgaaggcgtgctgcgcgccgagcgtcagcgcaaggtcggcgagctgatt
ctcagccgtgaaccgctgaccggcctcgatgaaaatgcgcgcagtcaggcgctggtcaat
ctggtgcggcgcaaaggtctggagctgctgccgtggacgccggaactgcgtcagtggcag
gcgcgggtggcgttgttgcggcagttggagttgaaccatcaggatgacagtcagtggccg
gatgtaagcgacgcggcgttgctgaacaccctcgaagattggctgatgccctatctgggc
aaggtctcacggctcagccattttgccagcctggatctgtcgagcatcgtacgcaatctg
ctgccctggccgttgccgcaaaagctcgatgagctggcgccgcatcatttgagcgtgccg
tcggggtcgtcgattcgtctggattacagcgagtttccacctgttctcgcggtgcgtttg
caggaattgttcgggctggcggatacgccgcggattgccggcgggcggcaggtggtcaaa
ttgcatctgctatcgcctgcgcggcggccggtgcaggtgacgcaggatctggccaacttc
tggcgcagcacctatgccgaggtgaagaaggatttgaaggggcgctatccgaagcattat
tggccggatgatccgttggtggccgaggcgactgcgcggatcaagccgcgcaagtag
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