Pseudomonas tensinigenes: HU718_027420
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Entry
HU718_027420 CDS
T07620
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU718_027420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptz03021
]
HU718_027420 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptz03400
]
HU718_027420 (rpoC)
Enzymes [BR:
ptz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU718_027420 (rpoC)
Transcription machinery [BR:
ptz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU718_027420 (rpoC)
DNA repair and recombination proteins [BR:
ptz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU718_027420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QXI05701
LinkDB
All DBs
Position
complement(6156379..6160578)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGNSVSGTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKEIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGGEDKFVSKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgctcatggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggtcgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgttgttatcgacccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgtatg
ggtgctgaagctgtccgtgaactgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagaaatcccgcaaaccaactctgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgctctgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaaaccgttc
attttcggcaagctcgaaatgcgtggtcttgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttctcgctgaagtgattcgcgaacacccg
gttcttctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgcgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtattcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggttaaagtacgtatcaacgaaaccgtcaacgaccgtgac
ggcaacagcgtgagcggtacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggtttcgcttactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatccctgacgagaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaagcgaacgacgaagtttccaaggcaatgatggccaac
ctctcgaaagagaaggttatcgaccgtcatggcgttgaagtcgatcaagagtctttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgattgcggcaccgaacacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggcactgaggacgttatcgttccggcc
ggtactctggttgacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctatggcatttgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagttgacgatgcgtacgttccacatcggtggtgcg
gcaagccgtacttccgcagccgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaaacacgttgagcgagtggatggtcacctggttgctgtgtcccgttccggt
gagctggccatcgctgatgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgattaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtgctcgacgcgaaagatcgtccagctgcgggcaaagaaatccgtccagcagtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggcggacggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaagacccgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggttattaccccgaac
gatggttccgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccaagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattcgagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctgggcggcgaagacaagttcgtctcc
aagtacactcgcgttctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcagtcaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggcaggt
accggcctggcatatcacagcgagcgcaagcgtcgtcgtgaagcagacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcgctgaccgaagcgctgaactcgagcggtaactga
DBGET
integrated database retrieval system
