Pseudomonas tensinigenes: HU718_028445
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Entry
HU718_028445 CDS
T07620
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU718_028445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptz03019
]
HU718_028445
Enzymes [BR:
ptz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU718_028445
Messenger RNA biogenesis [BR:
ptz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU718_028445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXI05893
UniProt:
A0ABX8PXY0
LinkDB
All DBs
Position
6386647..6388533
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AA seq
628 aa
AA seq
DB search
MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTIEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRPSQPPRAAADRAPDEFLDDDVDN
FGNRVDYVPKPAPAGGRGRRPGAPAQGAGAGSGAPRGGQSQGRQNGPRNSNGSSTGTPPA
KRSGGPRNGAPRDGQSGRRDDSASSSRNRRPARDDQPRSEPAVQNPRSNGPKIMHKESKA
DRFPTPEQLDQLPSRPRGEKPALLTRNR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccgacccgcgaactcgcggcccaggtacacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggcgtcgacgtgctcgttgcctgcccgggtcgtttg
ctcgatctgtgcggccagggcagcgttgacctgtcccacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcgtgcacgacgtgaagaaagtcctcgcgcgt
ctgccgtccaagcgtcagaacctgctgttctcggcgacgttctccaaggacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtcttccgtctgccggccagccacaaacgtgcgctgctg
gcccacctgatcaccgctggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggcctgccggctgtggcgatccac
ggtaacaagagccagaacgcgcggaccaaagcgctggccgacttcaaggccaaccaggtg
cgcatcctggttgccaccgacatcgccgcacgcggtctggacatcgatcagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagattatgtgcaccgtatcggccgtacg
ggccgtgccggtcgttcgggcgaggcgatttcgctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gattcgagcaccattgaagccgagaagccggaagtgcgtgagcgtccggacgtgcgcaac
ccgcgcaatccacgtggcccacgcggcgacgggccgaatggcggcggcggtggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggtgaacgtggcgagcgt
cctgcccgtcagcagaagccgcgcgaaggcactccagcccgcgaacagcgcccgagccaa
ccgccacgtgcggcggctgatcgtgcaccggacgagttcctcgacgacgatgtggataac
ttcggcaaccgcgttgactacgtgcccaagcctgccccggctggcggtcgcggccgtcgt
ccaggcgcaccggctcaaggtgctggcgcaggttcgggcgcaccacgcggcggtcagtcg
cagggtcgtcagaacggtccgcgcaacagcaacggctcgagcaccggcaccccgccagcc
aaacgcagcggcggcccgcgcaacggcgcaccgcgtgatggtcagtcgggtcgtcgcgac
gattccgcctcgtcctcgcgcaaccgccgtccggcccgtgacgatcagccacgcagcgag
ccagccgtgcagaacccgcgcagcaacggcccgaagatcatgcacaaggaatcgaaagcc
gaccgcttcccgacgcctgagcagctcgatcaactgccaagccgcccgcgtggcgagaaa
ccagcgctgctgactcgcaatcgctga
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