Candidatus Pelagibacter ubique: SAR11_0014
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Entry
SAR11_0014 CDS
T00257
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03420
Nucleotide excision repair
pub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAR11_0014 (uvrD)
03430 Mismatch repair
SAR11_0014 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_0014 (uvrD)
Enzymes [BR:
pub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAR11_0014 (uvrD)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAR11_0014 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SAR11_0014 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAZ20839
UniProt:
Q4FPM1
LinkDB
All DBs
Position
13829..15865
Genome browser
AA seq
678 aa
AA seq
DB search
MINSEYLNNLNNAQKEAVLYLDGPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV
TFTNKAAKEMQNRVSSILNSEAIGLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQ
VRLIKNICKAENIDIKQLAPKFILSIIDRWKNKGFHPDEVVINKNDIFERTIRPLYKIYQ
QKLLDLNACDFGDLILHVVKILEKNHDIRNIYSNNFKYILVDEYQDTNYIQSRWLNLLSE
KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNSKVIRLEENYRSSQNILSVASNLIA
NNQNRVGKTLKTTMEEGDLVKLNCFKNGKDEAIGVSDEIEKKLKKKYSFNNIAILVRAIF
QTREFEERFLKIGLPYRILGGTKFYERAEIKDCVAYLRLIHQPKDDLAFDRIVNNPKRAI
GESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIGLSSFLFLMDKWRNDINIKKIN
HVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSAMKDFDNLENFLEHVALATSVD
QDWDGEKVNMMTMHGSKGLEFDVVFLPGWEEGLFPHQKSIEEKGQNGLEEERRLAYVGIT
RAKKKALISFAMNRFYQGNWIDSMASRFIEELPEKFLEKNSFFDDSKDNEEDFEFNQDFE
IEEGTRSPGWIRYQKRIK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgataaactctgaatatttaaacaacctgaataatgctcaaaaagaagctgttttatat
cttgatggaccgttactaattgttgcaggagctggatctggaaaaacgaaagttctcact
tcaagaattgctcatataatcaacgaaaaaaaagcttttccaaaccaaatcttatcagtg
acttttactaataaggctgcaaaagaaatgcaaaacagagtaagctcaatattaaattct
gaggctataggactttcttggcttggaacctttcactctatatgtgcaaaactacttaga
aagcacgcaccagcagctggattaacttcaaactttacaattattgatacagatgaccag
gtaagattaatcaaaaatatatgtaaagctgaaaatatagacataaaacaattagcccca
aaatttattctttcaataattgataggtggaaaaataaaggcttccatccagatgaagtc
gttatcaataaaaatgatatttttgaaagaactatacgtcctctatataaaatttatcaa
caaaagttattagatttaaatgcatgtgactttggagatttaattttacacgtggttaaa
attttagaaaaaaatcatgacattagaaatatttattcaaataattttaaatatatactt
gtagatgagtatcaagatactaattatatacaaagtagatggctaaacttgctctcagaa
aagcataaaaatttatgctgtgttggagatgatgatcaatccatttatagttggcgtgga
gcagagataaaaaatttcttagagtttgatcaagtatataaaaattcaaaagtaataaga
ttagaagaaaattatcgttcctcacaaaatatattatctgttgcttcaaatcttatagct
aacaatcaaaacagagttggaaaaactttaaagacaactatggaggaaggagatcttgtt
aagcttaattgttttaagaatggaaaagatgaagcaataggggtttctgatgaaattgaa
aaaaaacttaaaaaaaaatattcttttaataatattgctattctagttagagctattttt
cagacaagagaatttgaggaaagatttttaaaaattggcttaccctacagaattcttggt
gggacaaaattttatgaaagagcagaaattaaagattgtgttgcctatttaagattgatt
caccagccaaaagatgatttagcttttgatagaatagtcaataatcccaaaagagcaatt
ggagaaagtactataaaattaattcatgagttttcaaaaacaaacgctgttagtttagaa
attgcttctaaaaaattaattgaagaaaatttaattaaacccaaaactaaaattggtcta
agctcttttttattcttaatggataagtggaggaatgacattaatattaaaaaaattaac
catgttaaattattacaactagttttagatgaatctggttattcaagtatgttaaaaaac
aaaaaagatttggaaaatgaaaacagacttgaaaatattaaagagcttttaagtgcgatg
aaagattttgataatttagaaaattttctagaacatgtggctcttgccacctcagttgat
caggattgggatggggaaaaagttaacatgatgacaatgcatggatctaaaggacttgaa
tttgatgtggttttcttacccggttgggaagaaggtcttttcccacaccaaaaatccatt
gaagagaaaggccaaaatgggcttgaagaagaaaggcgattggcatatgtgggaataaca
agggcaaaaaaaaaagcactgatatcttttgctatgaataggttttatcaaggaaattgg
atagatagtatggcttcaagatttattgaggaattaccagaaaaatttttagaaaagaat
tctttttttgacgactctaaagataatgaagaagattttgaatttaatcaagattttgaa
attgaagaaggaactagaagtcctggatggataagatatcaaaaaagaattaaatga
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