Candidatus Pelagibacter ubique: SAR11_0162
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Entry
SAR11_0162 CDS
T00257
Symbol
groEL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11_0162 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pub03019
]
SAR11_0162 (groEL)
03110 Chaperones and folding catalysts [BR:
pub03110
]
SAR11_0162 (groEL)
03029 Mitochondrial biogenesis [BR:
pub03029
]
SAR11_0162 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pub04147
]
SAR11_0162 (groEL)
Enzymes [BR:
pub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SAR11_0162 (groEL)
Messenger RNA biogenesis [BR:
pub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SAR11_0162 (groEL)
Chaperones and folding catalysts [BR:
pub03110
]
Heat shock proteins
HSP60 / Chaperonin
SAR11_0162 (groEL)
Mitochondrial biogenesis [BR:
pub03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SAR11_0162 (groEL)
Exosome [BR:
pub04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SAR11_0162 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
SAR11_0162 (groEL)
Exosomal proteins of breast cancer cells
SAR11_0162 (groEL)
Exosomal proteins of colorectal cancer cells
SAR11_0162 (groEL)
Exosomal proteins of bladder cancer cells
SAR11_0162 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AAZ20984
UniProt:
Q4FPA5
LinkDB
All DBs
Position
164576..166240
Genome browser
AA seq
554 aa
AA seq
DB search
MAKVVKFDSEARAAMIRGVDILANTVKVTLGPKGRNVVIDKSYGAPRITKDGVSVAKEID
LEDKFENMGAQMVKEVASKTNEEAGDGTTTATILAQAIVKEGVKYVTAGMNPMDVKRGID
AAVEHVKASLIASAKKVKDTDEIAQVGTISANGDKEIGNMIAKAMQKVGNEGVITVEEAK
GVETELDVVEGMQFDRGYLSPYFITNADKMTTELENPFILLHEKKLTNLQPMVPLLEAVV
QAGRPLMIISEDVEGEALATLVVNKLRGGLKVVAVKAPGFGDRRKSMLDDIAILTGGQVI
SEDIGVKLENVKLTDLGSCKRVKVDKDNSTIISGNGKKSEIEARCAQIKQQVGETTSDYD
REKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVEDALNATRAAAEEGIVVGGGCALLY
ASQSLDTLKVKGDDQKAGVALVAKALQAPIRQITLNAGVDGSVVVGKLLEQNKKNMGYDA
QNEEYVDMFAKGIIDPVKVVRTALQDAASIAGLLVTTEAMIADKPDDKDSGAGGMSGGMP
GGMGGMGGMGGMGM
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagttgtaaaattcgactctgaagcaagagcagcaatgataagaggtgttgat
atccttgctaacacagtaaaagttactcttggaccaaaaggtagaaatgttgttatcgac
aaatcttatggtgcaccaagaattactaaagatggtgtttctgttgcaaaagaaattgat
cttgaagataaatttgaaaacatgggtgctcaaatggttaaggaagttgctagcaaaaca
aatgaggaagctggtgatggaacaactacagcaactattttagcacaagcaattgttaaa
gaaggtgtaaaatatgtaacagctggcatgaaccctatggatgtcaaaagaggaatagat
gcagcagtagaacatgttaaagcgagcttaattgcttcagcaaaaaaagttaaagatact
gatgagattgctcaagttggaactatttcagctaatggtgataaagaaattggtaacatg
attgcaaaagctatgcaaaaagttggcaatgaaggtgttatcactgttgaagaagctaag
ggagtagaaactgagttagacgttgttgaaggtatgcagtttgatagaggttatttatca
ccatactttattactaacgctgataaaatgactacagagttagaaaaccctttcatctta
ttgcatgaaaagaaattaactaacttacaaccaatggttccacttttagaagctgttgta
caagctggtagaccactaatgattatttctgaagatgttgagggcgaagctcttgcaact
cttgtagtaaataaacttagaggtggtttaaaagttgttgcagttaaagctccaggtttt
ggtgatagaagaaaatcaatgcttgatgatattgcaattttaacaggcggtcaggttatc
tctgaagatattggtgttaaacttgaaaacgttaaacttactgatcttggatcttgtaag
agagttaaagttgataaagataacagcacaatcattagcggcaatggtaagaaatctgaa
attgaagctagatgtgctcaaatcaaacaacaagtaggtgaaacaacttctgactatgat
agagaaaaacttcaagaaagactggcaaaacttgctggtggagttgctgtaatcaaagtt
ggtggtgcaactgaagtagaagttaaagaaagaaaagatagagttgaagatgctcttaat
gcaactagagctgctgctgaagaaggaatagtagttggtggtggttgtgctcttttatac
gcttcacaaagtcttgacacacttaaagttaaaggagacgatcaaaaagctggcgttgca
ttagttgctaaagctttacaggctcctattagacaaataactttaaatgctggagttgat
ggttcagttgtagttggaaaactacttgaacaaaataaaaagaatatgggttacgatgct
cagaacgaagaatacgttgatatgtttgcgaaaggtatcatcgatcctgttaaagttgta
agaacagctttgcaagatgcagcttcgattgctggattacttgtaactactgaagccatg
attgctgacaaaccagacgacaaagattctggtgctggtggaatgtctggtggaatgcct
ggtggaatgggcggcatgggtggcatgggcggaatgggcatgtaa
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