Candidatus Pelagibacter ubique: SAR11_0200
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Entry
SAR11_0200 CDS
T00257
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03030
DNA replication
pub03410
Base excision repair
pub03420
Nucleotide excision repair
pub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAR11_0200 (polA)
03410 Base excision repair
SAR11_0200 (polA)
03420 Nucleotide excision repair
SAR11_0200 (polA)
03440 Homologous recombination
SAR11_0200 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pub03032
]
SAR11_0200 (polA)
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_0200 (polA)
Enzymes [BR:
pub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAR11_0200 (polA)
DNA replication proteins [BR:
pub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAR11_0200 (polA)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SAR11_0200 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAR11_0200 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF3323
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AAZ21022
UniProt:
Q4FP67
LinkDB
All DBs
Position
complement(200829..203603)
Genome browser
AA seq
924 aa
AA seq
DB search
MDKIKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNEN
LQKPTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPN
YEADDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGV
GPEKVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLI
ENKDKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYGE
PLLEETAKETKPEKKHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQT
DLVGISLSTKIGQACYIPIGHKFKGCLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVLY
KQGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVE
LDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKF
LKVLSEKFEKKISKLEKEVFKISKKEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNA
SVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLA
SSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNN
EDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNA
YFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQG
SASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTE
SDLHTFSTPLTVDVNTGDNWGILH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggataaaataaaaaaaacagatcatttttatttaatagatggttcaggttacattttt
agagcttattatgcattaccacccctaactagaaaaagtgacggtcttccagtaggtgca
gttagtggattttgcagtatgctatttaaactattagaggattcaaaatcaaatgaaaat
cttcaaaaaccaacacactttgctgtaatatttgatgctgctagaaaaacttttagaaat
gaaatttattcagactataaagctaatagatcagaagccccagatgatttagcaccacag
tttgaatacataagaaagtcagtagttgcttttaatttaccatctgtagatcttccaaat
tatgaagcagatgatttaatagccacttatgtagaacaaattttagcaaagggtgcaaag
gtgacaatagtctcttcagataaagacttaatgcaattgtatagaaaagacgttcgtata
ttcgatcctatgaaaaataaatttataacacctgaagatatagtaactaaatttggagtg
ggcccagaaaaagttattgatgttcaatccttagctggagacagtagtgataatgttccg
ggagtacctgggataggtgtaaaaactgcagcagaactgattaataagtatggaactcta
gaaaaattattagataacgctcaagaaataaaacaaaataaacgaagagaaacacttata
gagaacaaagataaagcgataattagcaaaaaattagtgacactaatgaaggatgctcct
gttgaaagaaagttagaggaatttcatctaaagaagattgataaaaataaactatataaa
tttttaagagaaatggagtttaatagacttcttagttctgtcatttctgcatacggagaa
ccactgttagaagagacagcaaaagagacaaagcctgaaaaaaaacatcaaaatataagt
aaaaaaaattatcatctaattactaatgaaaaagaaatagatgagtggattaacgaagca
gaagaagctggagagctagcaattgatacagaaactagttctttagatgcacatcagact
gatttagtgggaatttcattaagcactaaaattggccaggcttgttatattccaattggt
cataagtttaaaggatgtttaaaaaaagaaactgtaattaaaaaactcaaaccactttta
gaagacaagagtgtaaaaaaaattggtcaaaatattaagtttgattttattgtcttgtat
aaacagggaataaatatgaattcaatggaggatacaatgctgatgtcttatgtattagat
gctggaaaaaatagacataatatggataccttgtctgagattcatctacagcataaaaca
atttcatttaaagaaattgttggtacaggtaaaaaggaaataaactttagtgatgtagag
ctagataaggcaatggagtatgctgctgaagatgctgatattacttacagattatacaaa
atatttagtaaaaatttaaaattagagaaattaactaatatttatgaaatctttgaaaaa
cctttaattaagatactagcatttatggaaattgaaggaattaaaattgataataaattt
ttaaaggttttgtctgaaaaatttgaaaaaaaaataagtaaactagaaaaagaagttttt
aaaatttcaaaaaaagaatttaatattgcatcaccaaaacaattaggtgaaattatttat
aatgatttgaaaattgctgtacttaaaaaaactagaaaaggtagttttgccacaaatgca
agtgtgttagaagacttagcgtttaaaggacatgaatttccaaaattaattctagattgg
agacaagtgtccaagcttaaaaacacttactcagatgctttacctgaacacattaatcca
aatactaaacgagttcacacatcatttttattggcagcaacaacaacaggaagattggca
tccagtgatccaaacctacaaaatattcctattaaatcagaggatggtaaagatataaga
aaagcttttatagcagaaaagggcttcacattaatatctgcagattataatcagattgaa
atgagaattttagctgatttggcagaggttaaagagctgaaaaaagcgtttagtaacaat
gaagatattcactctcttacagcaagccaggtatttaatgttgatattaaaaaagtagac
caagacatgagaaggaaggctaaggctattaattttggaataatttatggtatttcacaa
tatggacttgcaaaacaaatcaacgtttcaaatcatgaagcagatgaatttttaaatgcc
tatttcttaaaatttcccgaaataaaaatttatatggataatacaattaagttttgcaga
aaaagtggatatgtaaccaatatttttggtcgaagatctcactttaatggaattaatgat
aaaaatttcaatgtgagaaattttcaagaaagagcagctattaatgctcctattcaagga
tcagcatcagaaatcatgcgacttgcaatgattagacttaataaaaaatttgaaagcatt
aaaaataataaatcaaaaatattattacaaattcatgatgaattaatttttgaggttcca
gtaaaagaagtcaaaaatataactgaaataatcaaggatgaaatgacgagtgttacagaa
agtgatttacacactttttcaacaccattgacggtagacgtgaatacaggggacaattgg
ggaatacttcattaa
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