Candidatus Pelagibacter ubique: SAR11_0243
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Entry
SAR11_0243 CDS
T00257
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00020
Citrate cycle (TCA cycle)
pub00190
Oxidative phosphorylation
pub00650
Butanoate metabolism
pub00720
Other carbon fixation pathways
pub01100
Metabolic pathways
pub01110
Biosynthesis of secondary metabolites
pub01120
Microbial metabolism in diverse environments
pub01200
Carbon metabolism
Module
pub_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pub_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
pub_M00149
Succinate dehydrogenase, prokaryotes
pub_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
SAR11_0243 (sdhA)
00650 Butanoate metabolism
SAR11_0243 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
SAR11_0243 (sdhA)
00720 Other carbon fixation pathways
SAR11_0243 (sdhA)
Enzymes [BR:
pub01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
SAR11_0243 (sdhA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
DAO
Thi4
GIDA
HI0933_like
FAD_binding_3
Pyr_redox_2
FAD_oxidored
Motif
Other DBs
NCBI-ProteinID:
AAZ21064
UniProt:
Q4FP25
LinkDB
All DBs
Position
complement(245159..246931)
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AA seq
590 aa
AA seq
DB search
MSSYKIIDHEYDVIVLGAGGSGLRAAVGLSEAGLKTACISKVFPTRSHTSAAQGGISASL
GNMGEDDWRWHMYDTVKGADWLGDQDSIEYLCKEAPAAVIELEKYGVPFSRTDDGKIYQR
PFGGMTKNYGNGIVQRTCAAADRTGHAILHTLYGQALKHNTEFFIEYFALDLLMKDGECK
GLIAWNLNDGTIHRFRAHSTIIATGGYGKAYYSATSAHTCTGDGNAMVLRAGLPLQDMEF
VQFHPTGIYGHGTLISEGVRGEGGYLVNSKGERFMERYAPKAKDLASRDVVSRSMSIEIN
EGRGVGKEQDHVHLHLSHLDKNIIESRLPGITEAARLFANVDVTKEPIPVVPTVHYNMGG
IPTNYKAEVLTGNDSETVPGLMAIGEAACVSVHGANRLGSNSLIDLVVFGRAAAKRAAEL
VKPGTPHEDIGEAETEKCLERFDKLRNSNGENSTAELRLSMQKTMQSKCAVFRTEKTLKE
GVDNIRKAYDGMESISVKDKSLVFNTDLVETLEFDNLIRQAITTVDSAYNRQESRGAHAR
EDFPKRDDEKFMQHTIAWCNGKDSKIGYRPVTKTTLTNEVQYFPPQERVY
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatataaaataatagaccacgaatacgatgtcatcgtacttggtgccggagga
tcaggtctaagagctgctgttggtttaagtgaagctggtttaaagacagcctgcatttca
aaagtatttccaacaagaagtcatacctcagctgcacaaggaggaatttctgcatcttta
gggaatatgggtgaagatgattggcgttggcatatgtatgatactgttaaaggtgctgac
tggttaggtgaccaagatagtattgagtatctttgtaaagaagctccagctgctgttata
gagttagaaaaatatggagttccatttagcagaactgatgatggcaaaatttaccaaaga
ccttttggtggaatgacaaaaaattatggtaatggaattgttcaaagaacatgtgcagct
gcagatagaactggacacgcaatacttcatactctttatggacaagctttaaaacataac
actgaattttttattgaatattttgctttagatttattaatgaaggatggtgaatgcaaa
ggtcttattgcttggaatttaaatgatggaacaattcatagatttagagcgcacagcaca
ataattgcaacagggggttacggaaaagcttattattctgcaacttcagcacacacttgt
actggagatggaaatgcaatggttttaagagcaggcttaccattacaagatatggaattt
gtacaatttcacccaacaggaatttatgggcacggaactttaatttctgaaggtgttaga
ggtgaaggtggatatttagttaattcaaaaggtgaaagatttatggagcgttacgcacca
aaagctaaagacttagcatctagagatgtagtaagtagatcaatgtcaattgagattaac
gaaggaagaggtgtgggtaaagaacaggatcatgttcatttacacttaagtcatttagac
aaaaatattattgaaagtagacttccaggaataacggaagcagcaagattatttgcaaat
gttgatgtaactaaggagccaataccagtagtgcccaccgttcattataatatgggaggt
atcccaacaaactataaagctgaagtattaacaggaaatgattctgaaacagttccagga
ttaatggcaattggtgaggctgcctgtgtttctgttcatggagcaaatagattaggatct
aattctttaattgacctagttgtatttggaagagctgcagccaagagagctgcagaactt
gtaaaaccaggaactccacacgaggatataggagaggctgaaacagaaaaatgcttagaa
agatttgataaattaagaaactctaacggtgaaaatagtacagcagaacttagactttca
atgcagaaaactatgcaatcaaagtgtgctgtttttagaacagaaaaaacgcttaaagag
ggtgttgataatattagaaaagcatacgatggaatggaatcaatttctgtaaaagataag
tcacttgttttcaatactgatttagtggaaacattggaatttgataatttgattagacaa
gcaattacaacagtggattctgcttataatagacaagagagtagaggtgcgcatgcaaga
gaagatttcccaaaaagagatgatgaaaaatttatgcaacacactattgcttggtgcaat
ggaaaagattcaaaaattggatatagaccagttactaaaacaactttaacaaatgaagtt
caatactttccacctcaagaaagagtttactag
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