Candidatus Pelagibacter ubique: SAR11_0257
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Entry
SAR11_0257 CDS
T00257
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase (DAP epimerase)
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00300
Lysine biosynthesis
pub00470
D-Amino acid metabolism
pub01100
Metabolic pathways
pub01110
Biosynthesis of secondary metabolites
pub01120
Microbial metabolism in diverse environments
pub01230
Biosynthesis of amino acids
Module
pub_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SAR11_0257 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SAR11_0257 (dapF)
Enzymes [BR:
pub01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
SAR11_0257 (dapF)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
AAA_7
NPP-6_helical
Motif
Other DBs
NCBI-ProteinID:
AAZ21079
UniProt:
Q4FP10
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All DBs
Position
260349..261173
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AA seq
274 aa
AA seq
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MDIKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIKKNKEIDANVE
FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV
NWQEIPLSKQLDTQDLKIEIIDRNNTKHIGGIAINVGNPHIIFFVDDIEAFDLKNIGPKI
ENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTD
IEFVLGSLTISIDERNSIHMKGPVSDIKNINIKL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagcatttaaaatggatggtttaggcaatgattttgtaattattgatcaa
agaagccaagattttaatttagataaagatcaaataattaagatatgtgatcgtagtttt
attggatgcgatcaactcatcctaattaagaaaaataaagaaatagatgcaaatgtagaa
ttttttaattcagatggaagcatatctggtgcttgtggaaatggcactaggtgtgttgca
gatcttctatcaaaagaaagtggtaaaaaagaaataacgctcttaacaacttctggctca
ctaaaatcaaaaattttaggaaataatttagtcgagactgaaattggtataccaaaagtt
aattggcaagaaattccattaagtaagcagctagatactcaagacttaaaaattgaaatt
atagatagaaataataccaaacatattggtggaatagccataaatgtaggcaatccgcac
ataattttttttgtagatgatattgaagcatttgacttaaaaaatattggtccgaaaatt
gaaaatcatcctctatttcctgaaaaatgtaatgtgaccctagccaaagttataaataga
aatttaataaaagtaaaagtttgggaaagaggagctggacttaccaaggcttgtgggacg
gcagcttgtgcaacagctgttgcagctaacattaataatctggtagaaaaaactacagat
atagagtttgtcttaggtagtttaacaatttctattgatgaaagaaatagcattcatatg
aaaggacctgtgtctgatattaaaaatatcaacattaagttgtaa
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