KEGG   Candidatus Pelagibacter ubique: SAR11_0348
Entry
SAR11_0348        CDS       T00257                                 
Symbol
rho
Name
(GenBank) transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
pub  Candidatus Pelagibacter ubique
Pathway
pub03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAR11_0348 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pub03021]
    SAR11_0348 (rho)
   03019 Messenger RNA biogenesis [BR:pub03019]
    SAR11_0348 (rho)
Transcription machinery [BR:pub03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SAR11_0348 (rho)
Messenger RNA biogenesis [BR:pub03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SAR11_0348 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT Fungal_virus_P2_C S1CSD-TOTE-2 AAA_25 AAA Mor
Other DBs
NCBI-ProteinID: AAZ21170
UniProt: Q4FNR9
LinkDB
Position
338267..339535
AA seq 422 aa
MNIQELKLKSSEQLIAQAEKLGIENASTLRKQEILFAILKKVAEKEEITGAGVLQLLQDG
FGFLRAMESNYLAGPDDIYVSPSQIRKFGLRTGDTVEGPVRAPKEGERYFALLQVEKINF
EEPEKARHKIAFDNLTPLYPNKQMVMEVETTKIEKKPDLTPRLIDLVSPIGKGQRSIIIS
PPKAGKTMILQSIANSIAKNYPESYLMVLLIDERPEEVTDMKRTVKGEVISSTFDEPASR
HVAVAEMVIEKAKRLTEHKKDVVILLDSITRLGRAYNAVIPSSGKVLTGGVDANALQRPK
RFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSETVLDRKIAERRIYPAI
DITKSGTRREELLFDKDDLSKMNVLRRIISPMGTMDAIEFINSKLKETKSNADFFSSMNK
PA
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaatattcaagaactaaaactaaaatcgtctgaacaattaatagctcaagcagaaaag
cttgggattgaaaatgctagcacacttagaaaacaagaaattttatttgctatactaaaa
aaagttgcagaaaaagaggagataactggagctggagttttacaattattacaagatggg
tttggttttttaagggcaatggaatcaaactatttggctggaccagacgatatctatgtt
agtccaagtcagattagaaaatttggtttaagaacaggagacaccgtcgaaggtcctgtt
agagcgcccaaagagggagaaagatattttgcattattacaagtagaaaaaataaatttt
gaagaaccagaaaaagctcgtcacaaaattgcatttgacaatttaactccactctaccca
aacaaacaaatggtgatggaagttgagacaaccaagattgaaaaaaaaccagatttaact
ccaagattaattgaccttgtaagtccaattgggaaaggtcaaagatcaataattatatct
cctcctaaagcgggtaagacaatgattttacaaagtattgcaaactcaatagctaaaaac
tatccagaaagttacttgatggttttattgattgatgaaagaccagaagaagtaacggat
atgaaaagaacggttaagggtgaggttatcagttctacttttgatgagcctgcatcaaga
cacgttgctgtagctgaaatggtaattgaaaaagcaaaaagattaactgagcataaaaaa
gatgttgtaattttattagactcaatcacaagattgggtagagcttataatgcagtaatt
ccaagttctggaaaggtgctaacaggtggagttgacgcaaatgcacttcaaaggccaaaa
agattttttggtgccgctagaaatattgaagaaggaggatcattaacaatcatctcaact
gcactgattgacacgggatcaagaatggatgaagttatttttgaagaatttaaaggaact
ggaaatagtgaaacagttttggatagaaagattgcagaaagaagaatttatccagcaatt
gatataactaaatctggaacaagaagagaagaattactttttgataaggatgacctttca
aaaatgaatgtattgagaaggatcatcagtcctatgggaacaatggatgctattgaattt
attaattcaaaacttaaagaaacaaaaagtaatgcggatttctttagctcaatgaacaaa
ccagcttaa

DBGET integrated database retrieval system