Candidatus Pelagibacter ubique: SAR11_0350
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Entry
SAR11_0350 CDS
T00257
Symbol
trmE
Name
(GenBank) tRNA modification GTPase
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
pub
Candidatus Pelagibacter ubique
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pub03016
]
SAR11_0350 (trmE)
Transfer RNA biogenesis [BR:
pub03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
SAR11_0350 (trmE)
Prokaryotic type
Methyltransferases
SAR11_0350 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
RsgA_GTPase
MMR_HSR1_Xtn
AAA_28
ABC_tran
GTP_EFTU
DUF5448
AAA_24
THOC7
Ras
AAA_18
Roc
AAA_29
NNH6
Motif
Other DBs
NCBI-ProteinID:
AAZ21172
UniProt:
Q4FNR7
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All DBs
Position
341586..342917
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AA seq
443 aa
AA seq
DB search
MTIYALSTGPGISGIAIVRVSGKDTKKVIKLLTNAALPETRVATLRKINKINTSELIDEG
IILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKIN
LLKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPDEDLP
EDILKNIKKISNEVILNIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDVA
IVSEIAGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKADNADLKLIV
IDAKSIDFKGVLKELMDENAILVINKSDLLNKDLNSEIKNYEHVLISVKNNLNLEDLISK
IKNKLKNKFITSEDILITRARHRQHLEQSLNCLKNFEEKNEAEDFDKAAEDLRLATRHLG
MIVGKVDVEEILGSIFNDFCIGK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttatgctctttccactggtccaggtatttcaggaattgctattgttagagtt
tctggaaaagatactaaaaaagtaataaaactattaaccaacgcggctctcccagagaca
agagttgctactttaagaaaaatcaataaaatcaatacttctgagcttattgatgaaggt
ataatattgtggtttcctggccctgagagctacacaggggaggatatggcggaattccac
atacatggaagtaaagcagtaattgatgccctgcatcactctatttcaaaaattaaaaat
tgtcgtttagctgatcctggagagtttacaaagcttgcctttcaaaatggaaaaataaat
ttgcttaaggcagagagtattgcagatttaatttcagcagaaactgaaatccaaagacaa
caagcaattaagattatgaatggaaaatctgcagataaatttaataacttaagagaaaaa
cttttaaaaattttatcacacgttgaagcaaaaatagactttccagatgaagatctgcca
gaagatattttaaaaaatataaaaaaaatttctaatgaagtaattttaaatataaaaaaa
attctagacgatcagaaagttggtgaaagaattagagaaggttttaagattgcaatcata
ggaccaaccaacgctggaaagtctagcttactaaatcacctttctaatcgagatgtagca
attgtttcagaaatagctggaacaacaagagatgtaattgagactcatttaaatattgat
ggttatccagttgttgtttctgatactgcaggaattagagattctaaaaatgaaatagaa
aaaaaaggaataaaattagcccttgataaagcagacaatgcagacttaaagttaattgtt
atagacgctaaaagcattgattttaaaggagttttgaaggaattgatggacgaaaatgca
atactagtgattaataaatcagatcttctaaataaagatttaaattctgaaataaaaaat
tatgaacatgttttaatttctgtaaaaaataatctcaatttagaagatttaatttcaaag
attaaaaataagttaaaaaataaatttatcacaagtgaggatattttaattacccgtgca
agacatagacaacatcttgaacaaagcttaaattgtttgaaaaactttgaagaaaaaaat
gaagcagaagattttgataaagctgcagaagatcttcgtttagcaacacgacatttagga
atgatagttgggaaagtagatgttgaagagatattaggtagtattttcaatgatttttgc
attggcaaataa
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