Candidatus Pelagibacter ubique: SAR11_0392
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Entry
SAR11_0392 CDS
T00257
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11_0392 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pub03019
]
SAR11_0392 (pnp)
03016 Transfer RNA biogenesis [BR:
pub03016
]
SAR11_0392 (pnp)
Enzymes [BR:
pub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SAR11_0392 (pnp)
Messenger RNA biogenesis [BR:
pub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAR11_0392 (pnp)
Transfer RNA biogenesis [BR:
pub03016
]
Prokaryotic type
tRNA degradation factors
SAR11_0392 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
S1_RRP5
KH_KhpA-B
T6PP_N
Motif
Other DBs
NCBI-ProteinID:
AAZ21213
UniProt:
Q4FNM6
LinkDB
All DBs
Position
383206..385278
Genome browser
AA seq
690 aa
AA seq
DB search
MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS
VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY
DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA
GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE
VKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLFADDENYSDFNVNDELKNLEK
KIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDE
QRLESLDGQHRERFMLHYNFPPFSVGETGRIGTGRREVGHGKLAWRAINSSLPPKEEFPY
TFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDILG
DEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKALSE
SRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPDEE
SRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEKVT
DIVKEGDEVKVKVIGFDRGKVKLSMKQAAE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaagtatacaagaaggaaattgaagtagcaggtaagaagataagtttagaaaca
ggtaaagtagcaagacaagcagacggagcaatcattgcttcatgtggtgaaacagttatt
ttagcaacagtagtaggagccaaaaaagtaaatccagatatggattattttcctctgtct
gtaaattaccaagaaaaatattatgcaggtggtaaaattcctggtggatactttaaaaga
gaagcaagaccaactgaaagtgaacaattgatttcaagattaattgatagacccatcaga
cctttgtttccaagtgaattcaaaaatgaagttcagttattaccaactgtaatctcatat
gataaagacaatcaaccagatattttagcaattacagcttcatcagctgcattagccatt
tcaggaatgccatttatggggcctgtaggtgcttcaagagttggtttagttgatggaaaa
tacatattaaacccatcaaaagctgagttagaaaactctactttagatttagttgtagct
ggtactaaagatgctgtgctgatggttgagtcagaaacgtcaggtttaacagaagaagta
atgttagatgcagttaagtttggtcacgaaggttttgttccagtaatcgaaatgatcgag
gaacttgcaaaagaatgcagaaaaccagaatggactgttgagaaaaaagatttatcagaa
gttaagaaaaaacttgaagaaaactttacagaagatttaactaaagcttttgcaacaata
gacaaacaagatcgatcaaatcaaatttcagaaatttctgataaagcaaaacaacttttt
gcagatgatgaaaattactctgatttcaatgttaatgatgaattaaaaaatcttgaaaag
aaaattgttagaactgatattcttaaaaataaaaaaagaattgatggcagaggcttggct
gatgtaagagctattgagtgtgaagttggtgttttaccaagaactcacggatcagctcta
tttactagaggcgaaacacaagcgattgtagttactactttaggtacatctgatgacgaa
caaagattggaaagtttagatggacagcatagagaaagatttatgcttcattacaacttc
cctcctttctcagttggtgaaactggaagaattggaactggaagacgtgaagttggtcat
ggaaaattagcatggagagcaattaactcttcattacctccaaaggaagagtttccatat
actttcagaatagtatcagaaattacagaatccaatggttcttcatcaatggcgagtgtt
tgtggtgcatctcttgcacttatggatgctggagtgccaattaaagagccagttgcaggt
attgcaatggggttaattaaagaaggcgatgattttagtgtcttgtcagatattttaggt
gatgaagatcaccttggagatatggactttaaagttgctggaactaaagatggaattact
tcgcttcaaatggatattaaaattacaggtatcacatttgaaatcatggagcaggcttta
aaacaagcaaaagaaggaagaattcatatcttaggtgaaatgaataaagctttaagtgaa
tcaagagctgatgttggtgaacacactccaaaaatggaacaaattactgttgataaaaaa
gatattgcagctgtaattggaaaaggtggagcaacgattagagaaattgttgaaaaatca
ggtgctaaactagatgtgaacgatgaaggtgtggtaactgttgctgctccggacgaagag
tccagaaacattgctatgcaaatgatcaaagacatcacagcaaaagctgaactaaataaa
atttactcaggtaaagtaatgaagattatggagtttggtgcatttgtaaatttcttaggt
aaacaagatggtcttgttcacatttcagaacttgctactaaaagagtagaaaaagttact
gatattgttaaagaaggtgatgaagtaaaagttaaagtgattggtttcgatagaggtaaa
gttaaactttctatgaaacaagctgctgaataa
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