Candidatus Pelagibacter ubique: SAR11_0408
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Entry
SAR11_0408 CDS
T00257
Symbol
mutM
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAR11_0408 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_0408 (mutM)
Enzymes [BR:
pub01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SAR11_0408 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SAR11_0408 (mutM)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAR11_0408 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AAZ21229
UniProt:
Q4FNL0
LinkDB
All DBs
Position
397259..398122
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AA seq
287 aa
AA seq
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MPELPEVEIVKQSLSKKLEHKKIKKIIITNRNLRFKIPLKFEELLKNKIIKKVTRFSKYL
ILNFSDQSFCLIHLGMSGTVHLIKKNNISKFTNTSFYNSPSLPKKHNHVEIHFKGLRVIY
NDPRRFGFFKFIENKKELEKRFSHLGPEPFFKNFNLEYLIGYFTNKKKDIKSFLLDQKFV
SGIGNIYASEILFLCKINPITYASKLTKQDCKKIITYSKSVLNRAIKKGGSSIRDFKNIT
GKSGNFQKEFRVYQRENLSCLRTKCNGKIQKIFISNRSTFFCNTCQK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtagaaatagtcaaacaatcgctatctaaaaaattagagcat
aaaaaaatcaaaaaaataataattacgaatagaaatttaaggtttaaaattcctttaaaa
tttgaagaattattaaaaaataaaattattaaaaaagtaactagattttcaaagtatttg
atcttgaatttttctgatcaatctttttgtttaattcatttagggatgtctggaactgtt
catttaataaaaaaaaataatattagtaagtttaccaatactagtttttataattcacca
agcctaccaaaaaaacataatcatgttgaaattcattttaaaggtttaagagttatatac
aatgatcctagaagatttggattttttaaatttatagaaaacaagaaggaacttgaaaaa
agatttagtcatttaggacctgaaccattttttaaaaattttaacttagaatatttaatt
ggttatttcacaaataaaaaaaaggatataaaaagtttcttattagatcaaaaatttgta
tcaggaattggaaatatttatgctagtgaaattttatttttatgtaaaattaatccaatt
acctatgcatcaaagttaaccaagcaagattgcaaaaaaattattacttattcaaaaagt
gtacttaatagggctattaaaaaaggagggtcaagtattcgagattttaaaaacatcact
ggaaaaagtggaaatttccaaaaagaatttagggtgtatcaaagagaaaatctaagctgc
ttaagaactaaatgtaatgggaaaattcagaaaatatttatatctaataggtcaacattc
ttttgtaatacatgccaaaaatag
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