Candidatus Pelagibacter ubique: SAR11_0413
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Entry
SAR11_0413 CDS
T00257
Symbol
lysA
Name
(GenBank) Diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00300
Lysine biosynthesis
pub00470
D-Amino acid metabolism
pub01100
Metabolic pathways
pub01110
Biosynthesis of secondary metabolites
pub01120
Microbial metabolism in diverse environments
pub01230
Biosynthesis of amino acids
Module
pub_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SAR11_0413 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SAR11_0413 (lysA)
Enzymes [BR:
pub01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
SAR11_0413 (lysA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-ProteinID:
AAZ21234
UniProt:
Q4FNK5
LinkDB
All DBs
Position
complement(402062..403276)
Genome browser
AA seq
404 aa
AA seq
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MKYIKKNLTIEKVNVQKIAKKFGTPTYCYSHKRLTENIKNFKKNFSSFSPLICFAVKSNT
NVNLIREIRKLGLGADVVSMGELMMALKAGIDPKKIVFSGVGKTSKEISYAIDKKILLIN
AESKSEIIEIEKIAKSKKKIVNIGIRLNPNTDAKTLKQISTGKKENKFGVDEKTFFELVN
FTNHSKNINLKCLSVHIGSQILDHKPYEKMLSVVNKIIKKSGHIFEFIDLGGGMGISYEK
NSKKLNYQKYNTAIQKFLKGQKTKIIFEPGRSIVGNIGFLISQVIYIKENTKKDFIILDA
AMNDLMRPALYGANHQTIPVVKNNRISNKTYEFVGPICESTDKFTTIKGFQKLKEKDLVL
MCDVGAYGMSLSSNYNVRPKPAELIIKGSKINIIKKRQKLKDLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatataaagaaaaacttaacaattgaaaaagttaatgttcaaaaaatagcaaaa
aagtttggtacaccaacttattgttattcgcacaaacggctaacagaaaatataaaaaat
tttaaaaaaaattttagctccttttctccattgatttgttttgctgtcaaatccaatact
aatgtaaatctgataagagaaattagaaaattagggctaggtgctgatgttgtttcaatg
ggtgagttaatgatggctctaaaagcaggtatagacccaaaaaaaattgttttttcgggc
gtgggtaaaacttcaaaagaaataagttatgcaattgataaaaaaattttattaataaat
gctgagtctaaaagtgaaattattgaaattgaaaaaattgcaaaatcaaaaaaaaaaata
gttaatataggtattagacttaatccaaatacagatgctaagacattaaaacaaatttca
actggaaaaaaagaaaataaatttggtgtagatgaaaaaactttttttgaattagtaaat
tttacaaatcattctaaaaatattaaccttaaatgcttaagtgttcatattggtagtcaa
attttagatcacaaaccatatgaaaaaatgctcagtgtagtgaataaaataataaaaaaa
agtggccatatctttgaatttattgatctaggtggaggcatgggtatttcttatgagaaa
aatagcaaaaaacttaactatcaaaaatataacactgctatacaaaaatttctaaagggc
caaaaaacaaaaataatatttgaacctggtcgatctatagttggtaatattggattttta
atttctcaagttatttatataaaagaaaataccaaaaaagatttcatcatattagatgct
gcaatgaatgatcttatgagaccagcattatatggtgcaaatcatcaaactatacctgta
gtaaaaaataatagaatttcaaacaaaacttatgaatttgtaggaccaatttgtgaaagt
acagacaaatttacaactataaaaggttttcagaaattaaaagaaaaagatcttgtgcta
atgtgtgatgttggagcttatggaatgtcactaagctcaaattacaatgtaagaccaaaa
ccagcagaattaataattaaaggatcaaagattaatattattaaaaaaagacaaaaacta
aaagatttgatttag
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