Candidatus Pelagibacter ubique: SAR11_0731
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Entry
SAR11_0731 CDS
T00257
Symbol
rne
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11_0731 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pub03019
]
SAR11_0731 (rne)
03009 Ribosome biogenesis [BR:
pub03009
]
SAR11_0731 (rne)
Enzymes [BR:
pub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAR11_0731 (rne)
Messenger RNA biogenesis [BR:
pub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAR11_0731 (rne)
Ribosome biogenesis [BR:
pub03009
]
Prokaryotic type
rRNA processing factors
SAR11_0731 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PI_PP_I
Motif
Other DBs
NCBI-ProteinID:
AAZ21550
UniProt:
Q4FMN9
LinkDB
All DBs
Position
complement(711784..713643)
Genome browser
AA seq
619 aa
AA seq
DB search
MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID
FGRDRHGFLSFNDIQSDYYQIPQSDLAKIKEEEEKAREELLKKSELEEQKNINEGNLNIN
DPVEVKLESEFETNDQITEGSDTPITDTTQVDEDKEQPSPVLHGRKPETRFRSKRYKIQE
VIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGERKKI
RTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIHQES
DIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKENIE
EKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEEISR
QIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSRQRL
RESAVKWKVTLTDESFAMKILKLVEVKAVLTKAKFVELKICEKISDFMKENFIEDLKYFE
EKNLIKIDIIADNSLIIPEYIIDLQNKTKKTIEIVQHIEKLKNLEEQKKEVKSFESPIKK
KPYKKKPFFKKKFFKKPVA
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaatttatacattgatgcttcgcatccaaatgaaacaagagttgtacttaag
tcaggtgaaaacattgaagactacgagtacgaaggcttaaaaaacaatttaataaaaaat
aatatctaccttggcaaggtaagccgagtagagccatctttacaagctgcatttattgat
tttggaagagatagacacggttttctatcctttaacgatattcaatctgactattatcaa
atacctcagagtgatttagcaaaaataaaagaagaagaagaaaaagccagagaagaacta
ttaaaaaaaagtgagctagaagaacaaaagaatattaacgagggtaatcttaatattaat
gatccagttgaagtaaaacttgagtctgaatttgaaacaaatgatcagataacagaaggg
agtgatactccaattacagataccactcaagtagatgaagataaagaacaaccttcgcct
gtactacatggtagaaaacctgaaacaagatttagatctaaaagatataagattcaagaa
gttataaaacctaaccaagtaattttaatacaagttttaaaagatgaaagaggacaaaaa
ggtgctgcgttgagtacttttatttctatagcaggtaaatatattgtactaatgcccaat
acaccaaaaggtggtggcatatctcgtaaaatatttaacccaggagaaagaaaaaaaatt
agaactattttaaacgatatagttatcccaaaagaaatggggcttattgtaagaaccgca
ggatcaaacaaaacaaaaaatgatattgatcatgatcttcaaactttgattaaaacttgg
aatgaaattaaagaaaatgcattaaactctatagctccatcattaatccatcaagaaagt
gatattataaaaagaactttgagagatatgtatgatgaaagtacaaatagtatcgtcatt
gaaggtaatgaaggttacaaaaaagcccaaaactttatgaagttaatgatgccctctcat
gtaaaaaaaataaaaaaatatagagaaaaagttcctttattttttaaagagaacattgaa
gaaaaattaaatcaaatttatgactcagaaataaaactaaaatcaggaggttacctagtt
ataaatccaactgaggcactagtttcaattgacataaattcaggaagctctattaaacaa
aaaaatgtagaaagtactgctttagacactaatcttgaggcagcagaagagatatctcga
caaataaaaataagagatctgtctggtctaattattattgattttattgatatgttgagt
tttggaaatagaaggttggttgagagaaaacttaaagaacaatgcagaactgatagggca
agaattcaaattggaagaattagtacatttggacttttagaaatgtctagacaaagatta
agggaaagtgctgtaaaatggaaagttacacttacagatgagtcttttgcgatgaagatt
cttaaattagtcgaggttaaagctgttttaacaaaagcaaaatttgtagaacttaagatt
tgcgaaaagatatcggactttatgaaagaaaactttattgaagatttaaagtattttgaa
gaaaaaaacttaattaagatcgatataattgcagataacagtcttattattcctgaatac
ataattgaccttcaaaacaaaactaaaaaaacaatagaaatagttcaacatatagaaaag
ttaaaaaacctagaagagcaaaaaaaagaagttaaatcttttgaaagtcctattaaaaaa
aagccttataaaaaaaaacctttttttaaaaagaaattttttaaaaaaccagtagcctag
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