Candidatus Pelagibacter ubique: SAR11_0742
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Entry
SAR11_0742 CDS
T00257
Symbol
csdB
Name
(GenBank) selenocysteine lyase chain A
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00450
Selenocompound metabolism
pub01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
SAR11_0742 (csdB)
Enzymes [BR:
pub01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
SAR11_0742 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
SAR11_0742 (csdB)
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Aminotran_1_2
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Beta_elim_lyase
Met_gamma_lyase
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
AAZ21561
UniProt:
Q4FMM8
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All DBs
Position
726405..727622
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AA seq
405 aa
AA seq
DB search
MSIENIKKEFPIFNNKVHNNDLVYLDSANSSQKPQSVIDRVNDFYTNEFSNTGRSVHYLA
VAATNLYENTRSSVQKYINAKDKNEIVFTKGATEAINLVANTYGQKFLKEGDEILITELE
HHSNYVPWHFLRQSKGIKIEFAEINDDGEITLESIEKKITSKTKLIAITHLSNVTGSVLP
VKEITELAHSKGIAVLVDGCQGAPHLKLDMQDIDCDFYAISCHKMYGPTGLGVLYAKKKW
LEELPPYQGGGGMIRDVKKDSISYGDLPNKYEAGTMATAQVIAFDQSIKFLEKIGIENMI
KHEQELIQYGQEILRKNNSVKLIGNPKHRSAVLSFTIEGVHPHDIATILDEDGVAIRAGH
HCCQILHDKLGIPASARASLGVYNTKDDLDQLNNSINNCKKIFNL
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatagaaaatattaaaaaagaatttccaatatttaataataaagttcataataat
gatcttgtatatcttgatagtgctaactcatctcaaaaaccacaatctgtaattgataga
gttaatgatttttatacaaatgaattttcaaacacaggtagaagcgttcattacttagca
gtagctgcaactaatctttatgaaaatacaagatcttctgttcaaaaatatattaacgct
aaagataaaaatgaaattgtattcactaaaggtgcgactgaggcaattaatcttgtagct
aatacctatggtcaaaaatttttaaaagaaggggatgaaatacttataacagaacttgaa
catcattctaattacgtgccctggcattttttacgacaatctaaaggtataaagattgag
tttgcagaaattaatgatgatggagagattactttagaaagcattgaaaaaaaaattaca
tcaaaaacaaaattaattgctattacacacttatcaaatgtaacgggatcagttttacca
gttaaagaaataacagaacttgctcattcaaaaggtattgcggttttagtagatggatgc
caaggtgctcctcatttaaaacttgatatgcaagacatagactgtgatttttatgctatt
tcttgccataaaatgtacgggccaacaggtcttggtgttttatatgcaaagaaaaagtgg
ctagaggaattaccaccctatcaaggtggcggtggaatgattcgagatgtaaaaaaagat
agcatttcatatggagatttacctaataaatatgaagctggaacaatggctacagcacaa
gttatagcatttgatcaatctataaaatttttagaaaaaatcggaattgaaaacatgatt
aaacatgagcaagaattaatccagtatggtcaagaaattttaagaaaaaataattcagtt
aaattaattggtaacccaaaacataggtcagcagttttgtcttttactatagaaggtgtt
catccacatgacatagctacaatattggatgaagatggtgttgctattagagcaggtcat
cattgttgtcaaatcctacatgacaaattaggaatacctgcaagtgcacgtgcttcatta
ggtgtttacaatacaaaagatgatttagatcaacttaataattctatcaataactgtaag
aaaatttttaatctctaa
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