Candidatus Pelagibacter ubique: SAR11_0900
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Entry
SAR11_0900 CDS
T00257
Name
(GenBank) metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11_0900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pub03019
]
SAR11_0900
Messenger RNA biogenesis [BR:
pub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAR11_0900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
DUF3910
Motif
Other DBs
NCBI-ProteinID:
AAZ21714
UniProt:
Q4FM75
LinkDB
All DBs
Position
864609..866264
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AA seq
551 aa
AA seq
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MKDELLFCPLGGSGEIGMNMNLFAYGKPGEHKWIMVDIGVTFADDTLPGIDLIYPDPGFI
VDKKDDLLGIILTHAHEDHIGAIAHLWPQLKCKIFATPFTAVLIKEKFKEKNIDVTKFLK
IVQLNGTVNLDPFKIEYITLTHSILEPNGLRIETPAGVILHTGDWKIDPEPLIGEKINSD
RLKEIGNEGVLAMICDSTNVFSMGKAGSELDVRKSLLNIMGSLKKRIVMASFASNVARME
TAFYCAEKTGRQISLVGRSMHRIFKAARQCGYLKNVIEPIDARDAKKIAREKIVYLCTGS
QGEPMAALMRISSNTHPDVFIEKDDAVIFSSKIIPGNEKKLYKLQNQLVKDGVEVISEES
EFVHVSGHPNRDDLREMYDWVKPQCAVPVHGEHRHMIEHMKFAKEMKVPHPVQVENGDIV
KLAPGKPHVFDKAPSGRLYLDGNMSVEEDAQSIKDRKNISANGYMEVTILITAKGNIHKR
PVLTFRGLPVYDVDEFIYELEEAIEKTTRTFSIKSKKQEFNLIDALKITCRKCAKDFTGK
RPFININLVRI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgaattattattttgccctctaggagggtccggagaaattggtatgaatatg
aacctatttgcctacggtaaacctggtgagcataaatggatcatggttgatattggggtt
acatttgctgatgatactttaccaggtattgatcttatttacccagatcctggatttatt
gttgataaaaaagatgaccttttaggaattattttaactcatgcacatgaagatcatatt
ggtgcgatcgcacatctttggcctcaacttaaatgtaaaatctttgcaactccatttaca
gcggttttaataaaagaaaaatttaaagaaaaaaatatagatgtaaccaagtttctcaaa
atagttcaattaaatggaacagtaaatttagatccatttaaaatagaatatataactcta
actcactcaatccttgagcccaatggtcttagaattgaaactccagcaggtgtaatattg
catactggtgattggaagattgatcctgagccacttattggtgaaaagattaattcagat
agacttaaagaaattggtaatgagggcgtgcttgctatgatttgtgattcaacaaatgta
tttagcatgggtaaagctggttcagagttagatgttagaaaaagtttattaaatatcatg
ggtagccttaaaaagagaattgttatggcttcttttgcttcaaatgttgcacgtatggaa
acagctttttattgtgcagaaaaaactggtagacaaatatctttagtaggaaggtccatg
catagaatatttaaagcagcaagacaatgtggttatttaaaaaatgttatagaacctatc
gatgcgcgtgatgccaaaaaaattgctagagaaaaaatagtttatctttgtacaggtagc
caaggggaacctatggcagcactaatgagaatttctagtaatactcacccggatgtattc
attgaaaaagatgatgctgttattttttcttcaaaaattattccaggtaatgagaaaaaa
ttgtataaattacaaaatcaactagttaaagatggtgttgaagttatttcagaagaaagc
gaatttgttcatgtttctggacatcccaatagagatgatcttagagagatgtacgattgg
gtaaaacctcaatgtgcagttcctgttcatggtgaacacagacatatgattgaacatatg
aagtttgctaaagaaatgaaagttccacatcctgttcaagttgaaaatggagatattgta
aaattagcacctggtaaaccacatgtttttgataaagcaccaagtggtagactttatttg
gatggtaatatgagtgtagaagaagatgctcaatcaattaaagatagaaaaaacattagt
gcaaatggatatatggaggttactattttaattactgcaaaaggtaatatccacaaaaga
cccgtgttaacttttagaggactgcctgtttatgatgttgatgagtttatatacgaatta
gaagaagcaatcgaaaaaacaactagaactttttctataaaaagtaaaaagcaagaattt
aatttaattgatgctttaaaaataacatgtagaaaatgtgctaaagatttcactggtaaa
agaccatttatcaatatcaacctagtaagaatttaa
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