Candidatus Pelagibacter ubique: SAR11_0967
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Entry
SAR11_0967 CDS
T00257
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAR11_0967 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_0967 (xthA)
Enzymes [BR:
pub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
SAR11_0967 (xthA)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SAR11_0967 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
KAP
DUF3828
Motif
Other DBs
NCBI-ProteinID:
AAZ21775
UniProt:
Q4FM13
LinkDB
All DBs
Position
complement(950443..951219)
Genome browser
AA seq
258 aa
AA seq
DB search
MIITSWNVNSVRARIENIKEYLQKFSPDVVMMQEIKTQDETFPYDDFSALDYESHVFGQK
SYNGVAIISKHKLENVKIDLIKDKLKQSRIISAELKHKKKNIQLINIYTPNGNPVDTDKY
TYKKNWLDKLIKQLKTLSKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFR
EMINLGFHDAYRHIHGEKEGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLNIVKNVNINKD
PRGKGKPSDHTPIEIELA
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgattattacatcttggaatgttaattctgttagagcaagaattgaaaatattaaagaa
tatcttcaaaaattttctccagatgttgttatgatgcaggaaattaaaacacaagatgag
acttttccctatgatgatttttcagcattagattatgagagtcatgtatttggacaaaaa
agttataatggtgttgctattatatccaaacacaaactagaaaatgttaaaatagatttg
attaaagataaattgaaacaatctaggattatttcagctgaactaaagcataagaaaaaa
aatattcaactgattaatatttatactccaaatggtaatcctgtagatactgataaatac
acttataaaaaaaactggttagataaattaattaaacaattaaaaactctttcaaagaaa
aatgaaaatattatcttagctggagattttaatattcttccctcagctgaagatgcttat
aatattaaagggtttgaagatgacgctttatacagacttgagataagaaaaaaatttaga
gaaatgattaatctaggttttcatgatgcctaccgtcacattcatggtgaaaaggaaggt
tatacttattgggattatatgagaggtgcttggcagaaaaataatggattaagaattgac
cacttcttagtatcaaattctttattaaatatagtaaaaaatgttaatattaataaagac
ccaagaggaaaagggaaaccctctgatcacacacctattgaaattgaattagcttaa
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