Candidatus Pelagibacter ubique: SAR11_1000
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Entry
SAR11_1000 CDS
T00257
Symbol
holB
Name
(GenBank) probable DNA polymerase III
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03030
DNA replication
pub03430
Mismatch repair
pub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAR11_1000 (holB)
03430 Mismatch repair
SAR11_1000 (holB)
03440 Homologous recombination
SAR11_1000 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pub03032
]
SAR11_1000 (holB)
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_1000 (holB)
Enzymes [BR:
pub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAR11_1000 (holB)
DNA replication proteins [BR:
pub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAR11_1000 (holB)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAR11_1000 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
nSTAND3
AAA_22
NPHP3_N
RNA_helicase
AAA_5
AAA_14
AAA_19
NACHT
AAA_24
AAA_16
ATPase
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AAZ21807
UniProt:
Q4FLY1
LinkDB
All DBs
Position
979881..980813
Genome browser
AA seq
310 aa
AA seq
DB search
MNLKPSENTKIYGMENFFHELSGLYKHKKLPNKILLSGKKGLGKSTLAYHLINYILSENE
DYKYNLENFCIHKDNKSYKLLQNNSHPNFYLIDLLTEKKSIDVGQIREMISYTNKSTFNN
MARFILIDNVENLNKNSVNALLKIIEEPNENVFFILINNSEKNILPTLKSRCLTFKINFT
FNESLSISNLILDKNVLDFINYDLLSFYNSPGEIISLFNFAEEKSINLKDHTISSFISSI
IDNNYYKKNKPVKILLINLIELFFLKKYLITNSKVTLINFYQKFIKKIYNTEKFNLDEES
LFLEFKSKLL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaaccatctgagaacactaaaatttatggtatggaaaatttttttcatgaa
ttaagtggactatataagcacaaaaaattgcctaataaaattttactgtctggaaaaaaa
ggattaggaaaatcaacattagcctatcatttaatcaactatattttatccgaaaatgag
gattataaatataatttagaaaatttttgcatccataaggacaataaatcttataaactt
ttgcaaaataactcccatccaaatttctatttaatagatttattaacagaaaaaaaaagc
attgatgtaggtcaaatacgtgaaatgattagttacacaaataaatcaacatttaataat
atggcaagatttattttaatagataatgttgaaaatctaaataagaattctgtcaacgca
ttacttaaaattattgaagaaccaaatgaaaatgttttttttatcttaataaataatagt
gaaaaaaatatactacccacactaaaatcaagatgtttaacattcaagattaattttaca
tttaatgagtccttaagtatttcaaatttaatactggataaaaatgtacttgattttatt
aattatgacttactaagtttttataattcacccggtgaaattattagtttgtttaatttt
gcagaagaaaaatctattaatttaaaggatcacactatttcaagttttataagttcgata
atagataataattattataagaaaaataaacctgtcaaaattttattaataaatttaatc
gagctattctttttgaaaaaatatctgataaccaattcaaaggttacattaattaatttt
tatcaaaaatttataaaaaaaatttataatacagaaaaatttaatctagacgaagaaagt
ttatttttagaatttaaatcaaaattgttataa
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