Candidatus Pelagibacter ubique: SAR11_1010
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Entry
SAR11_1010 CDS
T00257
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03410
Base excision repair
pub03430
Mismatch repair
pub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAR11_1010 (recJ)
03430 Mismatch repair
SAR11_1010 (recJ)
03440 Homologous recombination
SAR11_1010 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_1010 (recJ)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAR11_1010 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAR11_1010 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAR11_1010 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AAZ21817
UniProt:
Q4FLX1
LinkDB
All DBs
Position
988522..990216
Genome browser
AA seq
564 aa
AA seq
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MISVSGKKWEQKKINQNIVDKLKQEHDFSEILSRLIISRKFDNDEIATINTDLDLNNVFL
NNKDFSQSINLVVNSINNNEKICILGDYDVDGSAATSLFVKFFEDINHPFFYYIPDREKD
GYGATKKLFQKLILEKPKLIIMVDCGSTSNEAIDFLNENEIKSLIIDHHEINKPFPNANS
IINPKKDNSYKEYDYLCATTLTYFFLDLLIKKIKTKINISDYLIYVLLATVCDVMPLRKL
NRLIALNALKNFDITKNLPLSTLFDLNEKKNKININDLGYLIGPILNAGGRLGKSQYATE
LLSSNNDQVIKDRSTYLIKLNNKRKEIENLLLNEIDFKKIEKENKEVIIYYNPNINEGLI
GIIAARLKDYFNKPSIVITASNELLKGSARSVYNYNIGRIIKNLLDKDIIINGGGHNMAA
GFTLNKANLKDFENYILEDFLKSNTVNNNIFSYESEVSPLAFNQDFYDDIKKLEPFGTGN
SVPTFMLRDLKIIKPIVLNNKHISVILKSKTGFSIKSISFNTINTMIGEHLMSYKNNINV
IGQIGENIWNNKKTLQLTIRDLIL
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgatttctgtttcaggtaagaagtgggaacaaaaaaaaattaatcagaatattgttgat
aaattaaaacaagaacatgattttagtgaaattttatctagattaattatttcaagaaaa
tttgataatgatgaaatagcaacaatcaatacagatttagatttaaacaatgttttttta
aataataaagatttcagtcaatctattaaccttgttgtaaattccatcaataataatgaa
aaaatatgcattttaggtgattatgacgttgatggctctgcagctacatctttatttgtt
aaattttttgaagatataaatcatccatttttttactatatacctgatagagaaaaagat
ggttatggagctaccaaaaaactattccaaaaactgatcttagaaaagcctaaattaatt
attatggtggattgtggctcaacatctaatgaagcaatagattttttaaatgagaatgaa
ataaaatctttaatcattgatcatcacgaaattaataagccttttccaaatgcaaattca
attataaacccaaaaaaagataatagttataaagaatatgactatttgtgtgcaactaca
cttacatatttttttttagatttattgattaaaaaaatcaaaactaaaataaatatatct
gattatttgatatatgttttgttggctacagtatgtgatgttatgcctttaagaaaactt
aatagattaattgcattaaatgcccttaaaaattttgatataacaaaaaatttaccacta
agtactttgtttgacttaaatgaaaaaaaaaataaaattaatattaatgatttaggctat
ttaattggccctatattaaacgctggtggtaggttgggtaagtcacaatatgctacggaa
ttattatcttctaataacgatcaggttatcaaagataggtctacttatttaattaaattg
aataataaaagaaaagaaatagaaaatttgctattaaatgaaattgattttaaaaaaatt
gaaaaagaaaataaagaagtaataatttattataatccaaatataaacgaaggtttaatt
ggaattattgcagcaagattaaaagattactttaataaaccctccattgttattacagca
tctaatgaattattaaaaggatctgcaagatcagtttataattataatattggtcgcata
attaaaaatttactagataaagatataattataaatggtggtggtcataatatggctgca
ggatttacgctaaataaagcaaatcttaaagattttgaaaattatatattagaggatttt
ttaaaatctaatactgtaaataataatatattttcatatgaatcagaagtttcgccatta
gcatttaatcaagatttttatgatgatataaaaaaattagaaccttttggtacaggaaac
tcagtacccacattcatgctaagagatctaaaaataattaaaccaatagttctaaataac
aagcatatatctgtaatattaaaatcaaaaacaggattttcaattaaatcaatatcgttt
aatactattaatactatgattggtgaacacttaatgagttataaaaataacattaatgta
ataggccaaatcggagagaatatctggaataataaaaaaactcttcaattaactattaga
gaccttatcctataa
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