Candidatus Pelagibacter ubique: SAR11_1048
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Entry
SAR11_1048 CDS
T00257
Symbol
glyA
Name
(GenBank) glycine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00260
Glycine, serine and threonine metabolism
pub00630
Glyoxylate and dicarboxylate metabolism
pub00670
One carbon pool by folate
pub00680
Methane metabolism
pub01100
Metabolic pathways
pub01110
Biosynthesis of secondary metabolites
pub01120
Microbial metabolism in diverse environments
pub01200
Carbon metabolism
pub01230
Biosynthesis of amino acids
pub01240
Biosynthesis of cofactors
pub04981
Folate transport and metabolism
Module
pub_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SAR11_1048 (glyA)
09102 Energy metabolism
00680 Methane metabolism
SAR11_1048 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SAR11_1048 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
SAR11_1048 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
SAR11_1048 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
SAR11_1048 (glyA)
Enzymes [BR:
pub01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
SAR11_1048 (glyA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Aminotran_1_2
Ubiquitin_5
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
AAZ21854
UniProt:
Q4FLT4
LinkDB
All DBs
Position
complement(1018725..1020035)
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AA seq
436 aa
AA seq
DB search
MSSEKNYLNENYKSFFDDSLSVTDPELHKAISDELKRQQQHIELIASENIVSQAVLEAQG
SVLTNKYAEGYPGKRYYNGCEHVDVAENLAIERLKKIFDCKFANAQPHSGAQANGAVFLA
LLNPGDTFMGMSLNSGGHITHGLKISMSGKWFNPIGYDVDKESELIDYDNVEKLALEHKP
KLIICGGSAYSRVIDFKRFREIADKVGAYLMVDMAHFSGLVAGKGYPNPCEHAHVVTSTT
HKVFRSARGGIILTNHEDLAKKFNTAVFPGYQGGPLMHVIAGKAAGFLEALRPDFKDYIK
SVLANAKILSETLKNNGFKIYSGGTDTHLMLVDLRPFNVKGNAAAESLSNANITCNKNGI
PFDSEKPMITSGIRLGTQAATTRGFGLKEFEKVGELITKVVKGLSENPEDNGKIEEEVRN
EVIDLTSNFPIYKNLK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtgaaaaaaactatttaaatgaaaattataaaagcttttttgatgacagctta
tctgtaactgatccagaattacataaagccataagtgatgagctaaaaagacaacaacaa
catatagaattaattgcttctgaaaatatagtttctcaagctgttttagaggctcaaggc
tctgtattaacaaataaatatgcagaaggatatcctggaaaaagatactataatggatgt
gagcatgttgatgttgctgaaaatttagccatagagagattaaagaaaatttttgattgt
aaatttgcaaatgcccaaccacattctggggctcaagcaaatggtgctgtatttttagcg
ctattaaatcctggtgatacatttatgggaatgagtttaaattctggtggacatattact
catgggttaaaaatatcaatgtcaggtaaatggtttaatcccatagggtatgacgttgat
aaagagtctgaacttattgattatgataatgttgaaaaacttgcattagaacataaacca
aaactcataatttgtggtggtagcgcttattctagagtaattgactttaaaagatttaga
gagattgctgataaagtaggggcatatttgatggtggatatggctcatttttcaggttta
gttgctggtaaaggttatcctaacccatgtgaacacgcacacgtagttacttcaacaact
cataaagttttcagaagtgctagaggtggaattattttaactaatcatgaagacctagca
aaaaaatttaatactgcagtatttcctggttatcaaggtggaccgttgatgcatgtcatc
gctggaaaggctgctgggtttttggaagctttaaggccagattttaaagattatatcaaa
tcagttttggcaaatgccaaaattttatctgagacacttaagaataatggttttaaaatt
tattctggtggaacggatactcatttaatgttagttgatctaagacctttcaatgttaag
ggtaatgccgctgctgaaagcctttctaatgctaatattacctgtaacaaaaatggaata
ccttttgactctgaaaagccaatgattacttctgggataagacttggaactcaagctgca
acaactagaggctttggtttaaaagagtttgagaaagtaggtgaattaattactaaagtt
gtaaaaggtttgtctgaaaaccctgaggacaacggtaaaattgaagaagaggttagaaat
gaagttatagatcttacatctaactttccaatatataaaaatttgaaataa
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