Candidatus Pelagibacter ubique: SAR11_1336
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Entry
SAR11_1336 CDS
T00257
Symbol
potD
Name
(GenBank) spermidine/putrescine-binding periplasmic protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SAR11_1336 (potD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pub02000
]
SAR11_1336 (potD)
Transporters [BR:
pub02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
SAR11_1336 (potD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
Metallothio_Cad
Motif
Other DBs
NCBI-ProteinID:
AAZ22140
UniProt:
Q4FKZ8
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All DBs
Position
complement(1272839..1273960)
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AA seq
373 aa
AA seq
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MKKLSKLLLALSFVLSITTSAFAVTVVSWGGAYTESQKLGYGDPTAAKLGIPVNWVDYTG
GLSEIKAQKEAGKITWDIIDVYAKDTIVGCDEGIFHEFDFDKDFAPAPDGTPASQDFFTS
MPSKCAVGNILYSWNYAYNDATIGAKKPNSLKDFFDTKNFPGKRAIYKGAMSNLEIAITA
DGVNPGKGSDLTYRKLDADGGIDRAMNKLKALCTDPNGGCVFWNAGAQPPELLANGEVVM
ATGWNGRFFNAQMEGTPLVQVWDGQILDYEYFALVKDGPGYADGSAMKVLREMTSSEGLA
GSAKYIAYAPWRKSSIAVMEAGEPWFKDGKTSMVPHMPTAPANTKRYILMNPDFWADNQD
EIGEKWEAMKAGL
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaagtaaattattacttgctctatcttttgtactttctatcacgacttca
gcatttgcagttactgtagtgtcttggggtggtgcttatactgaaagtcaaaaattaggg
tatggtgatcctactgctgctaaattaggtatacctgtaaactgggtagactacactggt
ggattatcagaaattaaagctcaaaaagaagctggaaaaatcacttgggacatcatcgat
gtttacgcaaaagacactatcgttggatgtgacgaaggaattttccatgaattcgatttt
gataaagactttgcacctgctccagatggaacacctgcaagtcaggacttctttacaagc
atgccttcaaaatgtgcagttggaaacattctgtactcttggaactatgcttataacgat
gcaacaatcggtgctaaaaagcctaactcattgaaagacttttttgatactaaaaacttc
cctggtaaaagagcaatttacaaaggtgcaatgtctaacttagagattgctatcactgca
gacggtgtaaaccctggtaaaggttctgacttaacttacagaaaacttgatgctgacggc
ggtattgatagagctatgaacaagcttaaagcactttgtacagatccaaatggtggatgt
gtattctggaatgctggagctcaaccaccagaactactagctaatggtgaagtagtaatg
gcaactggttggaacggtagattctttaatgcgcaaatggaaggaactccacttgtacaa
gtatgggatggacaaattcttgactatgaatattttgcattagttaaagatggtccaggt
tatgctgacggtagcgctatgaaagtacttagagaaatgactagctcagaaggtttagct
ggaagtgctaagtatattgcatacgcaccttggagaaaatcttcaattgctgttatggaa
gctggagagccttggtttaaagatggtaaaacaagtatggtaccacatatgccaacagca
cctgctaacacaaaaagatacattcttatgaaccctgatttctgggcagataaccaagat
gaaatcggtgaaaaatgggaagcaatgaaagctggtctataa
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