Candidatus Pelagibacter ubique: SAR11_1370
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Entry
SAR11_1370 CDS
T00257
Symbol
pbpA
Name
(GenBank) Penicillin binding protein transpeptide
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00550
Peptidoglycan biosynthesis
pub01100
Metabolic pathways
pub01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SAR11_1370 (pbpA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SAR11_1370 (pbpA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pub01011
]
SAR11_1370 (pbpA)
Enzymes [BR:
pub01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SAR11_1370 (pbpA)
Peptidoglycan biosynthesis and degradation proteins [BR:
pub01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SAR11_1370 (pbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
AAZ22173
UniProt:
Q4FKW5
LinkDB
All DBs
Position
complement(1302965..1304932)
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AA seq
655 aa
AA seq
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MLGEDFGVKKVQTINRRMFIISAAKIIVFTGIITRLFSLQITENKKYLTLSDKNRLREWK
LPPIRGEFLDYFENVIAGNLKVYQLHVIPEEVEDFKYLMVRLKEILNISNNDFKKIIDQK
NKQKPWETIIISKNLTWEQFTKVNYYLHDLVGAKPVLSVSRNYPFSESYTHVLGYVSEAS
EKDILNNEIIRSTHVPGLKVGKNGLEKTFEDELIGTNGIQRYEVNAYGKRISQLDHTDGL
NGKTIKLTVDTEIQKFCNELLKGVAGSISIMDIYTGDIIAMQSSPSFDPNLFLFGINQDD
WQLIRNNPLKPLVNKTLSGLYSPGSTFKPMVALSALENKIIDENFKVNCTGKIEMYGQTY
HCWKKRGHGIVDLKSAMKQSCDTYFYEIARKLGVDRLKETSIKFGLGEKVLNETFSIEKK
GLIPDTKWKKNNLGKGWVIGETLITGIGQGYTQTTPLQLCQMTAQLANGGFKIYPKIIVE
EDSKTAEEIRFIMNENRRQLNKKDSGLKDTTEELLGFLDKKEHETLFKNSKNINLVREAM
FASTNEVRGTSYNSRIEDPKYQFAGKTGTSQVKRITEAARELDLSTSEIPYNERDHALYI
AFGPYKNPRYALSIVIEHGGSGSSAAAPIAKKLFKLIIDRHELREKQTKQNDLKI
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtgaagattttggtgtaaaaaaagttcaaaccattaatagaagaatgtttatt
attagtgctgctaagattattgtatttactggaataattactcgattattttcattacaa
attacagagaataaaaaatatttaactctatctgacaaaaatagattacgtgaatggaaa
ttacctccaattagaggtgagtttttagattattttgaaaatgttattgctggtaattta
aaagtatatcaacttcatgttattcctgaagaagtagaagattttaaatatttgatggta
aggttaaaagaaattttaaatattagtaataatgattttaaaaaaataatagaccaaaaa
aataaacaaaaaccttgggaaactataatcatttctaaaaatttaacatgggagcagttt
acaaaagttaattattacttgcacgatttagtaggagccaaaccagttctatctgtatca
cgaaactatccctttagtgaaagttatacacatgtcttgggctatgttagtgaagcgagt
gaaaaagatattctaaataatgaaattataagaagtacacatgtaccaggtctcaaagtg
ggaaaaaatggtttagaaaaaacttttgaagatgaattaattggtacgaatggtatccaa
aggtatgaagttaatgcctatggaaaaagaattagccaacttgatcataccgatggatta
aatggcaaaacaattaaactcactgtagatacagaaattcaaaagttttgtaatgagctt
ttaaaaggtgtagctggctcaataagtataatggatatttatacgggtgatataattgct
atgcagtcatcaccatcatttgaccctaatttatttctttttggaattaatcaagatgac
tggcagttaattagaaacaatccattaaaaccattagttaataaaactttatctggtttg
tattcaccaggctcaacattcaaaccaatggtagctttatcagcactagaaaataaaatt
attgatgaaaatttcaaagttaactgtacaggaaaaattgaaatgtatggacaaacttat
cattgctggaaaaaaagaggacatggcattgtagatttaaagagcgcaatgaagcagtct
tgtgatacatatttttatgagattgcgagaaaacttggtgtagatcgattaaaagaaaca
tctataaaatttggccttggtgaaaaagttttaaatgaaacatttagtattgagaaaaaa
gggttaattcctgacaccaaatggaaaaaaaataatttaggaaaaggttgggttataggt
gaaacattaatcacaggtattggacaaggctatactcaaacaacacctctacaattatgt
caaatgacagctcagcttgcaaatggaggatttaagatttatccaaaaataatagtagaa
gaggatagtaaaactgcagaagaaattagattcataatgaatgaaaatagaagacaatta
aataaaaaagacagtggattaaaagatacaacagaagaacttttagggtttttagataaa
aaggaacatgaaaccttatttaaaaattctaaaaatataaacttagttcgtgaagcgatg
tttgcatctacaaatgaggtcagagggacttcttataattcacgtatcgaagatcccaaa
taccaatttgctggaaagacaggaacatcacaggttaaaagaataactgaagctgcaaga
gaacttgatttaagtacctctgaaattccatataatgagagggatcacgctttatatata
gcgtttggtccatataagaatccaagatacgcattaagtattgttatagagcatggtgga
tcaggtagttcagctgctgcaccgattgcaaaaaaactgtttaaattaattatagataga
catgagctaagagagaaacaaactaaacaaaatgatttaaaaatataa
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