Panthera uncia (snow leopard): 125935621
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Entry
125935621 CDS
T08832
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
puc
Panthera uncia (snow leopard)
Pathway
puc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125935621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puc03019
]
125935621
03041 Spliceosome [BR:
puc03041
]
125935621
03009 Ribosome biogenesis [BR:
puc03009
]
125935621
03016 Transfer RNA biogenesis [BR:
puc03016
]
125935621
Enzymes [BR:
puc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125935621
Messenger RNA biogenesis [BR:
puc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125935621
Spliceosome [BR:
puc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125935621
Complex C
U4/U6.U5 tri-SnRNP related factors
125935621
Ribosome biogenesis [BR:
puc03009
]
Eukaryotic type
Pre-60S particles
Helicases
125935621
Transfer RNA biogenesis [BR:
puc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125935621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
125935621
NCBI-ProteinID:
XP_049505410
LinkDB
All DBs
Position
A1
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSATAPGTKNDREKEKGKWKGPPGSAEKGGKRFDGKLQSESTNTA
KTKRDADFEGTDEPIFGKKPRVEESINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgtttgaggacgactcggccaccgca
cccggaactaaaaacgacagagagaaggagaaggggaaatggaaggggccgccagggtct
gcagaaaagggcgggaaacgttttgatggtaaattacaatcggagtcaactaatactgca
aaaaccaagagagatgcagatttcgagggcacagatgaacccatatttggaaagaagcct
agggtagaagaatcaataaatgaagatttaagtttggctgacttgatgcccagagtcaag
gtacaatcagttgaaactgttgaaggatgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattggccttaagg
gaaaaacagcgtgtaatattcactagcccaattaaggctctgagtaaccagaaataccga
gaaatgtatgaagagtttcaagatgttggtttgatgaccggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattatcggcctacaccattgcagcactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcgaaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagctttagtaagaaagattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gtcgaacatgtacttcctcttctgaagcggggaattggtattcaccatggtggcttactt
cctattttgaaagaaactatagaaattctcttttccgaaggattgataaaggccttattt
gccacagagacttttgccatgggaattaatatgccagctagaactgttttatttacaaat
gcccgaaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgagctggaaggaggggaatggatgatagaggaattgtgattcttatggtggat
gaaaagatgagcccaacgattggaaaacagctacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttgctacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcaacattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgttgtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctacagccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctccaaaaag
tcaaatgtcaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaagcct
gatgagaaaggagagatgcaggttgttccagttttggtgcacctcctgtctgctatcagc
agtgttaggctttatattcctaaagaccttcggccagtggataatagacagagtgtttta
aagtcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gaacatagaatgtattctcatccacttcacaatgatccaaatttggaaacagtgtatact
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgccgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactccttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactactaagctgcttcgtgtttcaagagaattcaagtgag
atgcccaaattaactgagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttatctaagc
tcattcaaacctcacttaatggatgtagtgtatacctgggcaacgggagcaacatttgct
catatctgcaagatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttagacagatgtgtcaagcagcaaaagccattggaaatactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtatttgctgccagcctc
tacttgtaa
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