Panthera uncia (snow leopard): 125938452
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Entry
125938452 CDS
T08832
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
puc
Panthera uncia (snow leopard)
Pathway
puc03013
Nucleocytoplasmic transport
puc03015
mRNA surveillance pathway
puc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
puc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125938452
09122 Translation
03013 Nucleocytoplasmic transport
125938452
03015 mRNA surveillance pathway
125938452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puc03019
]
125938452
03041 Spliceosome [BR:
puc03041
]
125938452
Enzymes [BR:
puc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125938452
Messenger RNA biogenesis [BR:
puc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125938452
Spliceosome [BR:
puc03041
]
Complex C
Other components
EJC/TREX
125938452
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125938452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125938452
NCBI-ProteinID:
XP_049509573
LinkDB
All DBs
Position
B2
Genome browser
AA seq
435 aa
AA seq
DB search
MRSPWSGMAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP
GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE
LPDEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgccttggtcaggaatggcagagaacgatgtggacaatgagctcttggactat
gaagaagatgaggtggagacagcagcagggggagacggggctgaggcccctgccaagaag
gatgtcaagggctcctatgtctccatccacagctctggctttcgtgacttcctactgaag
ccagagttgctccgggccattgttgactgtggctttgagcatccgtcagaagtccagcat
gagtgcatccctcaggccattttgggaatggatgttctatgccaggccaagtcaggcatg
ggaaagacagcagtgtttgtgctggccacactgcaacagctggagccggttactggtcag
gtgtctgtgctggtgatgtgtcatactcgggagttggcttttcagatcagcaaggagtat
gagcgcttctctaaatacatgcccaatgtcaaggtcgcggtgttttttggtggtctgtct
atcaagaaggatgaagaggtgctgaagaagaactgcccgcatatcgtcgtggggacccct
ggccgcatcctagccctggctcgaaataagagcctcaatctcaaacacattaaacacttt
atcttggatgaatgtgataagatgcttgaacagctcgacatgcgtcgggatgtccaggaa
atttttcgcatgaccccccatgagaagcaggtcatgatgttcagtgctaccttgagcaaa
gagatccgtccagtctgccgcaagttcatgcaagacccaatggagatcttcgtggatgat
gagacgaagctgacgctgcatgggttgcagcagtactacgtgaaactgaaggacaacgag
aagaaccggaagctctttgaccttctcgatgtccttgagttcaatcaggtggtgatcttt
gtgaagtctgtgcagcgttgcattgccctggcccagcttctagtggagcagaacttccca
gccattgccatccaccgagggatgccccaggaggagaggctttctcggtatcagcagttt
aaagattttcaacgacgaattcttgtggccaccaacctatttggccgaggcatggacatt
gaacgggtgaacattgccttcaactatgacatgcctgaggattctgacacctacctgcat
cgggtggcccgagcaggccggtttggcaccaagggcttggccatcacgtttgtgtcagat
gaaaacgatgccaagatcctcaatgacgtgcaggatcgctttgaagtcaatattagtgag
ctgcctgatgagatagacatttcctcctacattgaacagacgcggtag
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