Paenarthrobacter ureafaciens: FV140_07760
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Entry
FV140_07760 CDS
T06726
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pue
Paenarthrobacter ureafaciens
Pathway
pue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV140_07760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pue03019
]
FV140_07760
Messenger RNA biogenesis [BR:
pue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FV140_07760
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
BRK
Motif
Other DBs
NCBI-ProteinID:
QMU82038
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Position
1661608..1663299
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AA seq
563 aa
AA seq
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MTQTALPGLVTPPKLPHGTLRIVPLGGLGEIGRNMAVFEISGKLLVVDCGVLFPEETQPG
VDLILPDFSYIEDRLDDVVGVVLTHGHEDHIGAVPYLLRLKADIPLIGSQLTLALVEAKL
QEHRIKPYTLTVTEGQVEQFGPFECEFVAVNHSIPDALAVFIRTEGGTVLHTGDFKMDQL
PLDGRITDLRHFARLGEEGVDLFMADSTNADVPGFTTAEKEIGPTLDLLFGQAQKRIIVA
SFSSHVHRVQQVLDAAAKHGRNVAFVGRSMVRNMAIAAKLGYLDVPPGILVDIKNIDDLP
DNRVVLMSTGSQGEPMAALSRMANGDHRVVVGEGDTVILASSLIPGNENAVFRIINGLLK
LGAAVIHKGTAKVHVSGHAAAGELLYCYNILKPLNAMPVHGETRHLIANGNIAAASGVPA
ENVILSDNGTVIDLRNQKARVVGQVEVGLVYVDGSSVGEITDADLKDRRILGDEGFISVI
TVINRTTGKIVSGPEIHARGVAEDDSVFDEIIPKINAALEEAVLNHADHTNHQLQQVVRR
VIGTWVNRKLRRRPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaaccgcccttcctggactggttactccgcccaaactgccacacggcacgctg
cggattgttccgctcggtggactgggggagattggccgcaacatggcggtcttcgaaatc
agcggcaaattgctggtggttgactgcggagtactcttcccggaagaaacacagcccggc
gtcgacctgatcctgcccgatttttcctacatcgaggaccgcttggacgacgtcgtcggt
gttgtcctgacgcacggacacgaagaccacatcggcgccgtaccctatctgctccgcctc
aaggccgatatcccgctcattggctcccagctgacccttgccctggttgaggcgaagctg
caggagcaccggatcaagccttacaccctcaccgtcaccgaggggcaggtggaacagttc
ggcccgttcgaatgcgagttcgtggcggtcaaccactcgattcccgacgccctggcagtg
ttcatccgcaccgagggcggaaccgtgctccacaccggcgacttcaagatggaccagttg
ccgctggacggccggatcaccgacctgcgtcactttgcccgtttgggtgaagaaggcgta
gaccttttcatggccgactccaccaacgccgatgttcccggcttcaccacggccgaaaag
gaaatcggtccaacgctggacctgctgttcgggcaggcgcagaagcgcatcattgtcgcg
tccttctcctcccacgtccaccgggtgcagcaggtcctggacgccgctgccaagcacggg
cgcaacgtggcttttgttggccgttccatggtccgcaacatggctatcgccgccaagctt
ggatacctcgacgtcccgccgggaatcctcgtggacatcaagaacatcgatgacctgccg
gacaaccgcgtggtcctcatgtccacaggctcgcaaggagagcccatggcggcgttgtcg
cgcatggccaacggcgaccaccgtgtggtggtgggcgaaggcgacacggtcatcctggct
tcgagcctcattccgggcaatgagaacgccgtcttccgcatcatcaacggcctgctgaag
ctcggtgcagcggtcatccataagggaaccgcgaaggtgcacgtctcgggtcacgcggca
gcaggggagttgctgtactgctacaacatcctcaagcccttgaacgccatgcccgtccac
ggtgaaacccggcacctgatcgccaacggaaacattgcggccgcgtccggcgtcccggcg
gagaatgtcatcctgagcgacaacggcaccgtcatcgacctgaggaaccagaaggcacga
gtcgtaggacaagtggaggttggcttggtctacgtcgacggctcgagcgtcggcgagatc
acggatgccgatctgaaagaccggcgcatccttggcgatgaaggcttcatctccgtcatc
accgtcatcaaccggaccaccggcaaaatcgtttccggtcccgaaatccatgcacgcggt
gtggctgaggatgattccgtcttcgacgagatcatcccgaagatcaatgccgcactggaa
gaagccgtcctgaaccacgctgaccacaccaaccaccagctgcagcaggtggtccggagg
gttatcggcacgtgggtgaaccgcaagttgcgccgacgcccgatgatcattcccgtggtc
ctggaggcatag
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