KEGG   Paenarthrobacter ureafaciens: FV140_16425
Entry
FV140_16425       CDS       T06726                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pue  Paenarthrobacter ureafaciens
Pathway
pue03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pue00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FV140_16425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pue03019]
    FV140_16425
   03009 Ribosome biogenesis [BR:pue03009]
    FV140_16425
Enzymes [BR:pue01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FV140_16425
Messenger RNA biogenesis [BR:pue03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FV140_16425
Ribosome biogenesis [BR:pue03009]
 Prokaryotic type
  rRNA helicases
   FV140_16425
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter
Other DBs
NCBI-ProteinID: QMU83492
LinkDB
Position
complement(3502316..3504400)
AA seq 694 aa
MPDTLNENLDAATESAEAAVTTADAAETAETQPAAVETPASAPAAESAPAAEDEEEGVRF
TDLGLDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRL
AELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHMDDFTVLPVYGGSAYGPQLAGL
RRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQETPETRQ
VALFSATMPGQIRRMSKQYLNNPAEISVKSKTSTGSNIRQRYLQVMGPHKLDAMTRILEV
EEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALREGRIDILVAT
DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK
ATRQPVEQMHLPTAETVNSLRLGKFAERITETLESEDVSLFRDLIASYEEEHKVPAAEIA
AALAVMAQGGQPLLVKDLPAAPEFQKRERSKDGFNSRGPSRTLTEGNATYRIAVGRRQRV
MPGSIVGAIANEGGISSSQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLEL
DTGRKPNRDGDRGGRGGNFKGNGGFKKEFRRHDGERSSADRGGRSYSERTSGSYGDRDRG
QSGGSRFGGHGDGARKPRGGGEGGHRDFNRKGKW
NT seq 2085 nt   +upstreamnt  +downstreamnt
atgccagacactctcaacgagaacctcgacgccgccactgaatctgccgaagcagcagtg
accaccgctgacgctgccgaaaccgccgaaacgcagccggccgccgtcgagacccccgct
tccgctcccgccgcagagtccgctcccgcagcagaagacgaggaagagggcgttcgtttc
accgacctcggccttgacggtcgcgtgctcgcagcccttcaggacgtcggctacgagaag
ccgtcgccgatccaggctgccaccattccgctgctgctcgaaggccgcgacgtcgtcgga
ctggcccagaccggtaccggcaagactgcagcattcgctgttcccgccctttcccgcctg
gctgagctgcacgacctcaacggcccctcacgcaagacccaggccctggtcctggccccg
acgcgtgaactcgccctccaggttgctgaagccttcacctcctacgccaagcacatggac
gacttcaccgtgctgcccgtctacggtggttcggcctacggtccccagctcgcaggcctt
cgccgcggtgcccaggttgttgtgggcacgccgggccgcgtgatcgaccacatctccaag
ggttccttggacctttccgaactccagtacctggtgctggatgaagccgacgagatgctg
cgcatgggctttgccgatgacgtggagcagatcttccaggagaccccggaaacccgccag
gttgccctgttctccgcgaccatgcccggccagatccgacgcatgtccaagcagtacctg
aacaacccggcggaaatctcggtcaagtccaagacctccacgggttccaacatccgccag
cgctacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtt
gaagaattcgacggcgttatcgccttcgtgcggaccaagatggctaccgaggacctcgcc
gacaaactgaaggcccgcggtttccaggccgccgccatcaacggcgacattccccagcag
cagcgtgaacgcaccgttgacgccttgcgtgagggccgcatcgacatcctggtggctacc
gacgtcgccgcccgtggcctcgatgtggagcgcatcagccacgtggtgaactacgacatc
ccgcacgacactgagtcctacgtccaccgcatcggccgtaccggtcgcgcaggacgcagc
ggtgacgccatcctcttcatgacgccgcgcgagaagtacctgctgcgtgccatcgagaag
gcgacccgccagcctgtcgagcagatgcacctgcccacggccgagacggtcaactcgctg
cgcctgggcaagttcgccgagcgcatcacggagaccctcgagtccgaggacgtctcgctg
ttccgcgacctgattgcctcctacgaagaagagcacaaggtcccggccgcagagatcgct
gcagcgctggcagtcatggcacagggcggccagccgctcctggtcaaggaccttcccgct
gcaccggaattccagaagcgcgagcgttccaaggacggcttcaactcccgcggcccctcc
cgcaccctcaccgagggcaacgcgacctaccggatcgcggttggacgccgtcagcgcgtg
atgcccggttccatcgtgggcgccattgccaacgagggcggtatctcgtcctcgcagatc
ggtggcatcgacatccgctcggaccactccctggttgaactgcctgcagacctcagcccg
gagcagctgcgcgccctgtcccgcacccgcatcggcggcgaactgatccacctcgagctg
gacacgggacgcaagccgaaccgtgacggagaccgtggtggccgtggcggcaacttcaag
ggcaacggcggcttcaagaaggagttccgccggcacgacggcgagcgttcctccgctgac
cgcggcggacgctcctacagcgagcgtacgtccggtagctacggtgaccgtgaccgcggc
cagtccggcggctcccgtttcggcggccatggtgacggcgcccgcaagccccgcggcggc
ggcgaaggcggccaccgcgatttcaaccgcaagggcaagtggtaa

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