Paenarthrobacter ureafaciens: FV140_16425
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Entry
FV140_16425 CDS
T06726
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pue
Paenarthrobacter ureafaciens
Pathway
pue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV140_16425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pue03019
]
FV140_16425
03009 Ribosome biogenesis [BR:
pue03009
]
FV140_16425
Enzymes [BR:
pue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FV140_16425
Messenger RNA biogenesis [BR:
pue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FV140_16425
Ribosome biogenesis [BR:
pue03009
]
Prokaryotic type
rRNA helicases
FV140_16425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QMU83492
LinkDB
All DBs
Position
complement(3502316..3504400)
Genome browser
AA seq
694 aa
AA seq
DB search
MPDTLNENLDAATESAEAAVTTADAAETAETQPAAVETPASAPAAESAPAAEDEEEGVRF
TDLGLDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRL
AELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHMDDFTVLPVYGGSAYGPQLAGL
RRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQETPETRQ
VALFSATMPGQIRRMSKQYLNNPAEISVKSKTSTGSNIRQRYLQVMGPHKLDAMTRILEV
EEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALREGRIDILVAT
DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK
ATRQPVEQMHLPTAETVNSLRLGKFAERITETLESEDVSLFRDLIASYEEEHKVPAAEIA
AALAVMAQGGQPLLVKDLPAAPEFQKRERSKDGFNSRGPSRTLTEGNATYRIAVGRRQRV
MPGSIVGAIANEGGISSSQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLEL
DTGRKPNRDGDRGGRGGNFKGNGGFKKEFRRHDGERSSADRGGRSYSERTSGSYGDRDRG
QSGGSRFGGHGDGARKPRGGGEGGHRDFNRKGKW
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactctcaacgagaacctcgacgccgccactgaatctgccgaagcagcagtg
accaccgctgacgctgccgaaaccgccgaaacgcagccggccgccgtcgagacccccgct
tccgctcccgccgcagagtccgctcccgcagcagaagacgaggaagagggcgttcgtttc
accgacctcggccttgacggtcgcgtgctcgcagcccttcaggacgtcggctacgagaag
ccgtcgccgatccaggctgccaccattccgctgctgctcgaaggccgcgacgtcgtcgga
ctggcccagaccggtaccggcaagactgcagcattcgctgttcccgccctttcccgcctg
gctgagctgcacgacctcaacggcccctcacgcaagacccaggccctggtcctggccccg
acgcgtgaactcgccctccaggttgctgaagccttcacctcctacgccaagcacatggac
gacttcaccgtgctgcccgtctacggtggttcggcctacggtccccagctcgcaggcctt
cgccgcggtgcccaggttgttgtgggcacgccgggccgcgtgatcgaccacatctccaag
ggttccttggacctttccgaactccagtacctggtgctggatgaagccgacgagatgctg
cgcatgggctttgccgatgacgtggagcagatcttccaggagaccccggaaacccgccag
gttgccctgttctccgcgaccatgcccggccagatccgacgcatgtccaagcagtacctg
aacaacccggcggaaatctcggtcaagtccaagacctccacgggttccaacatccgccag
cgctacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtt
gaagaattcgacggcgttatcgccttcgtgcggaccaagatggctaccgaggacctcgcc
gacaaactgaaggcccgcggtttccaggccgccgccatcaacggcgacattccccagcag
cagcgtgaacgcaccgttgacgccttgcgtgagggccgcatcgacatcctggtggctacc
gacgtcgccgcccgtggcctcgatgtggagcgcatcagccacgtggtgaactacgacatc
ccgcacgacactgagtcctacgtccaccgcatcggccgtaccggtcgcgcaggacgcagc
ggtgacgccatcctcttcatgacgccgcgcgagaagtacctgctgcgtgccatcgagaag
gcgacccgccagcctgtcgagcagatgcacctgcccacggccgagacggtcaactcgctg
cgcctgggcaagttcgccgagcgcatcacggagaccctcgagtccgaggacgtctcgctg
ttccgcgacctgattgcctcctacgaagaagagcacaaggtcccggccgcagagatcgct
gcagcgctggcagtcatggcacagggcggccagccgctcctggtcaaggaccttcccgct
gcaccggaattccagaagcgcgagcgttccaaggacggcttcaactcccgcggcccctcc
cgcaccctcaccgagggcaacgcgacctaccggatcgcggttggacgccgtcagcgcgtg
atgcccggttccatcgtgggcgccattgccaacgagggcggtatctcgtcctcgcagatc
ggtggcatcgacatccgctcggaccactccctggttgaactgcctgcagacctcagcccg
gagcagctgcgcgccctgtcccgcacccgcatcggcggcgaactgatccacctcgagctg
gacacgggacgcaagccgaaccgtgacggagaccgtggtggccgtggcggcaacttcaag
ggcaacggcggcttcaagaaggagttccgccggcacgacggcgagcgttcctccgctgac
cgcggcggacgctcctacagcgagcgtacgtccggtagctacggtgaccgtgaccgcggc
cagtccggcggctcccgtttcggcggccatggtgacggcgcccgcaagccccgcggcggc
ggcgaaggcggccaccgcgatttcaaccgcaagggcaagtggtaa
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