Pelosinus sp. UFO1: UFO1_2620
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Entry
UFO1_2620 CDS
T03211
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
puf
Pelosinus sp. UFO1
Pathway
puf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
puf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UFO1_2620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
puf03400
]
UFO1_2620
Enzymes [BR:
puf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UFO1_2620
DNA repair and recombination proteins [BR:
puf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UFO1_2620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIF52163
UniProt:
A0A075KIK1
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All DBs
Position
2751715..2752635
Genome browser
AA seq
306 aa
AA seq
DB search
MPNSTLVQIDNVQLTLSNLEKIFYTSTNFTKAQVIDYYSRIAPFLLPHLIGRPLTLKRYP
NGAEAKFFYQKQCPAFRPNWLATVPVWSEGKNKNIDFCLVQDLASLIWAVNLAAIELHTS
LSLAEDTLRPTLLVFDLDPGHPATIVQCAEVALILKKVLEDNNLQSFPKTSGSKGLQIYV
PLNTQAANYKQTKEFAHGIARLLEQQYPSLVVSKMRKFLRKGKIFIDWSQNDNHKTTVCV
YSLRAKKYPTVSTPITWEEVEKAYKEQDSTQLSFTTDQVLDRVQRIGDLFAPLLTLKQEI
PNIHSK
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatagcactctagttcaaattgataatgtacaattaactctctcaaacctagag
aaaatcttttatacatcaactaactttacaaaagcacaggtaattgattactatagtcgc
attgccccctttctcttgcctcacctgataggtcgtcctttaacgttaaaacggtatcca
aacggtgcagaagcgaagtttttctatcaaaaacagtgccctgcattccgcccaaattgg
ttagctacagtccccgtgtggagtgaaggcaagaacaaaaatattgacttttgcttagtc
caggacttagcctctcttatttgggctgttaatttggcagccattgaactccacacgtcc
ctgtcactggctgaagacaccttgcgtcctaccttacttgtcttcgatcttgatccaggt
catccagctactattgtacaatgcgctgaggttgcccttatactaaagaaagtcttagaa
gacaataatcttcagagcttcccaaagacttctggttctaagggcttacaaatttatgta
cccttgaatacgcaagctgccaactataaacaaacaaaagaatttgctcatggaatagct
cgtctattagaacaacaatatccttcccttgttgtttctaaaatgagaaaattcttgcgt
aaaggtaaaatttttatagactggagccaaaacgataaccataagacaaccgtttgtgtt
tactctttaagggcaaaaaaatatccaactgtttctactcctattacgtgggaagaagta
gagaaggcctataaagagcaagatagcacccagttgtctttcactaccgatcaagttttg
gatagggttcagagaatcggtgatttatttgccccccttcttacacttaaacaggaaata
cctaatattcacagtaaataa
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