Pelosinus sp. UFO1: UFO1_2775
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Entry
UFO1_2775 CDS
T03211
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
puf
Pelosinus sp. UFO1
Pathway
puf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UFO1_2775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puf03019
]
UFO1_2775
Messenger RNA biogenesis [BR:
puf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UFO1_2775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AIF52318
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Position
complement(2908434..2910107)
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AA seq
557 aa
AA seq
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MEKQNKLAIIPLGGLGEIGKNMTVIRYEDDIIILDSGLAFPEDDMLGIDLVIPDISYLLE
NQDKIRAVVITHGHEDHIGSLSYLLKQIDVPVYGTRLALGLAECRLKENGVANYKLVPVN
PGDQISFGTIQVGFIRVCHSIPDAVGMYFKTPVGTIVHTGDFKIDYTPVDGKAMDIHKFA
ELGDEGVLVLMSDSTNAERPGFTKSERQVGIALDEAFHNAKGRILLATFASNVLRVQQAI
TSACKYGRKVAIIGRSMINVVNIATELGYLTVPEGVIIDIDEIKNYPGNQILILSTGSQG
EPMSALTRMAMNDHRKIEISPSDTVIISATPIPGNEKSVSKTIDALLRLGAEVIHERSAG
IHVSGHASQEELKLMLTLVRPQYFIPVHGEYRMLISHGKIAQELGVAKENIFIGSNGQVF
EFSKEAGVVSGKLSGKVTSGKVFVDGLGVGDVGNIVMRDRSKLSQDGVLIVVITIDKASG
SVVAGPDLVSRGFVYVRESGHLMVEAKQKVKQVLANCEANKVTEWAAIKGSVRDALSKFV
YEKTRRSPMILPIIMEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaacaaaataaattagccattattccacttggtgggttaggcgaaatcggcaag
aatatgacagtaattcgctacgaagatgatattatcattcttgattctggtttagcattt
ccagaagatgatatgttagggattgacttagttatacctgatatctcctatcttcttgaa
aatcaggataagataagggcggttgttatcactcatggccacgaagaccacattggttct
ttatcctatctattaaagcaaattgatgtacccgtctatggtacgcgtcttgcattaggg
ttagccgagtgccgattaaaagaaaatggcgtggcaaactacaagttggttccagtgaac
ccaggcgatcaaatatcatttggtaccattcaagtagggttcattcgcgtatgtcactcc
attcctgatgccgtaggaatgtattttaagactccggttgggacaattgtccatacgggt
gattttaaaattgattatacaccagttgacggtaaagcaatggatattcataaattcgcc
gaattaggtgacgaaggtgtactcgtcttgatgtctgacagcacgaatgcggaacgaccg
ggttttacgaaatcagaacgacaggtcggcattgctttggatgaagcatttcacaatgcg
aaggggcgaattcttttagctacctttgcatccaacgtattacgtgtacagcaggcgatt
acgtctgcttgtaaatatggccgtaaggtggcaattatcggacgcagtatgattaacgtt
gtaaatattgctacagaacttgggtacttaacggttcccgaaggtgtcataattgacatt
gatgagattaaaaactatccaggaaaccaaatattgattttatcgactggtagccaaggg
gaacctatgtctgccttaacgagaatggcaatgaacgatcatcgaaaaattgagattagt
cctagtgatactgttattatttctgcgacaccgattccaggtaatgagaaatccgtgtca
aagacgattgacgccttattacgattaggagcagaagtgatacatgaacgttctgctggt
attcacgtttcagggcatgccagccaggaagaattaaaattaatgttaaccttagttcgt
cctcaatactttattcccgtgcatggcgagtatcggatgttaataagccatggaaagata
gctcaagaattgggcgttgccaaggaaaatatttttataggtagtaacggacaggtcttt
gagttttccaaagaagctggtgttgttagtgggaagttatcagggaaagtcacgtcaggt
aaggtttttgttgatggtttaggagtaggtgacgtaggaaatattgttatgcgtgatcgt
agcaaattatctcaagatggagttctcattgtagttatcactatagataaggccagtggc
tcagttgtagcgggtcccgatttagtttcccgtggttttgtctatgttagagaatcagga
cacttaatggttgaagctaaacaaaaagtaaagcaggtccttgctaattgtgaggccaat
aaagtgactgaatgggctgcaatcaaaggtagtgttcgagatgccttaagtaaatttgtt
tatgagaagactcgccgtagtccaatgattttacctattattatggaggtttaa
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