KEGG   Pelosinus sp. UFO1: UFO1_2775
Entry
UFO1_2775         CDS       T03211                                 
Name
(GenBank) Ribocuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
puf  Pelosinus sp. UFO1
Pathway
puf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:puf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UFO1_2775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:puf03019]
    UFO1_2775
Messenger RNA biogenesis [BR:puf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UFO1_2775
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: AIF52318
LinkDB
Position
complement(2908434..2910107)
AA seq 557 aa
MEKQNKLAIIPLGGLGEIGKNMTVIRYEDDIIILDSGLAFPEDDMLGIDLVIPDISYLLE
NQDKIRAVVITHGHEDHIGSLSYLLKQIDVPVYGTRLALGLAECRLKENGVANYKLVPVN
PGDQISFGTIQVGFIRVCHSIPDAVGMYFKTPVGTIVHTGDFKIDYTPVDGKAMDIHKFA
ELGDEGVLVLMSDSTNAERPGFTKSERQVGIALDEAFHNAKGRILLATFASNVLRVQQAI
TSACKYGRKVAIIGRSMINVVNIATELGYLTVPEGVIIDIDEIKNYPGNQILILSTGSQG
EPMSALTRMAMNDHRKIEISPSDTVIISATPIPGNEKSVSKTIDALLRLGAEVIHERSAG
IHVSGHASQEELKLMLTLVRPQYFIPVHGEYRMLISHGKIAQELGVAKENIFIGSNGQVF
EFSKEAGVVSGKLSGKVTSGKVFVDGLGVGDVGNIVMRDRSKLSQDGVLIVVITIDKASG
SVVAGPDLVSRGFVYVRESGHLMVEAKQKVKQVLANCEANKVTEWAAIKGSVRDALSKFV
YEKTRRSPMILPIIMEV
NT seq 1674 nt   +upstreamnt  +downstreamnt
ttggaaaaacaaaataaattagccattattccacttggtgggttaggcgaaatcggcaag
aatatgacagtaattcgctacgaagatgatattatcattcttgattctggtttagcattt
ccagaagatgatatgttagggattgacttagttatacctgatatctcctatcttcttgaa
aatcaggataagataagggcggttgttatcactcatggccacgaagaccacattggttct
ttatcctatctattaaagcaaattgatgtacccgtctatggtacgcgtcttgcattaggg
ttagccgagtgccgattaaaagaaaatggcgtggcaaactacaagttggttccagtgaac
ccaggcgatcaaatatcatttggtaccattcaagtagggttcattcgcgtatgtcactcc
attcctgatgccgtaggaatgtattttaagactccggttgggacaattgtccatacgggt
gattttaaaattgattatacaccagttgacggtaaagcaatggatattcataaattcgcc
gaattaggtgacgaaggtgtactcgtcttgatgtctgacagcacgaatgcggaacgaccg
ggttttacgaaatcagaacgacaggtcggcattgctttggatgaagcatttcacaatgcg
aaggggcgaattcttttagctacctttgcatccaacgtattacgtgtacagcaggcgatt
acgtctgcttgtaaatatggccgtaaggtggcaattatcggacgcagtatgattaacgtt
gtaaatattgctacagaacttgggtacttaacggttcccgaaggtgtcataattgacatt
gatgagattaaaaactatccaggaaaccaaatattgattttatcgactggtagccaaggg
gaacctatgtctgccttaacgagaatggcaatgaacgatcatcgaaaaattgagattagt
cctagtgatactgttattatttctgcgacaccgattccaggtaatgagaaatccgtgtca
aagacgattgacgccttattacgattaggagcagaagtgatacatgaacgttctgctggt
attcacgtttcagggcatgccagccaggaagaattaaaattaatgttaaccttagttcgt
cctcaatactttattcccgtgcatggcgagtatcggatgttaataagccatggaaagata
gctcaagaattgggcgttgccaaggaaaatatttttataggtagtaacggacaggtcttt
gagttttccaaagaagctggtgttgttagtgggaagttatcagggaaagtcacgtcaggt
aaggtttttgttgatggtttaggagtaggtgacgtaggaaatattgttatgcgtgatcgt
agcaaattatctcaagatggagttctcattgtagttatcactatagataaggccagtggc
tcagttgtagcgggtcccgatttagtttcccgtggttttgtctatgttagagaatcagga
cacttaatggttgaagctaaacaaaaagtaaagcaggtccttgctaattgtgaggccaat
aaagtgactgaatgggctgcaatcaaaggtagtgttcgagatgccttaagtaaatttgtt
tatgagaagactcgccgtagtccaatgattttacctattattatggaggtttaa

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